Difference between revisions of "NtdR"
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|style="background:#ABCDEF;" align="center"|'''Function''' || regulation of the ''[[ntdA]]-[[ntdB]]-[[ntdC]]-[[glcP]]'' operon | |style="background:#ABCDEF;" align="center"|'''Function''' || regulation of the ''[[ntdA]]-[[ntdB]]-[[ntdC]]-[[glcP]]'' operon | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU10560 ntdR] |
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 37 kDa, 6.645 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 37 kDa, 6.645 | ||
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ntdA]]'', ''[[yhjN]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ntdA]]'', ''[[yhjN]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU10560 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU10560 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU10560 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:yhjM_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:yhjM_context.gif]] | ||
Revision as of 12:30, 13 May 2013
| Gene name | ntdR |
| Synonyms | yhjM |
| Essential | no |
| Product | transcriptional regulator (LacI family) |
| Function | regulation of the ntdA-ntdB-ntdC-glcP operon |
| Gene expression levels in SubtiExpress: ntdR | |
| MW, pI | 37 kDa, 6.645 |
| Gene length, protein length | 987 bp, 329 aa |
| Immediate neighbours | ntdA, yhjN |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
miscellaneous metabolic pathways, transcription factors and their control, biosynthesis of antibacterial compounds
This gene is a member of the following regulons
The NtdR regulon:
The gene
Basic information
- Locus tag: BSU10560
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: transcription activation of the ntdA-ntdB-ntdC-glcP operon PubMed
- Protein family: LacI family
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: O07567
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon: ntdR PubMed
- Sigma factor:
- Regulation:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Reviews
Takashi Inaoka, Kozo Ochi
Activation of dormant secondary metabolism neotrehalosadiamine synthesis by an RNA polymerase mutation in Bacillus subtilis.
Biosci Biotechnol Biochem: 2011, 75(4);618-23
[PubMed:21512256]
[WorldCat.org]
[DOI]
(I p)
Original publications
Additional publications: PubMed
Takashi Inaoka, Kozo Ochi
Glucose uptake pathway-specific regulation of synthesis of neotrehalosadiamine, a novel autoinducer produced in Bacillus subtilis.
J Bacteriol: 2007, 189(1);65-75
[PubMed:17056753]
[WorldCat.org]
[DOI]
(P p)
Takashi Inaoka, Kosaku Takahashi, Hiroshi Yada, Mitsuru Yoshida, Kozo Ochi
RNA polymerase mutation activates the production of a dormant antibiotic 3,3'-neotrehalosadiamine via an autoinduction mechanism in Bacillus subtilis.
J Biol Chem: 2004, 279(5);3885-92
[PubMed:14612444]
[WorldCat.org]
[DOI]
(P p)
