Difference between revisions of "GerD"
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|style="background:#ABCDEF;" align="center"|'''Function''' || [[germination]] | |style="background:#ABCDEF;" align="center"|'''Function''' || [[germination]] | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU01550 gerD] |
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/GerD GerD] | |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/GerD GerD] | ||
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[salA]]'', ''[[kbaA]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[salA]]'', ''[[kbaA]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU01550 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU01550 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU01550 Advanced_DNA] |
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|colspan="2" | '''Genetic context''' <br/> [[Image:gerD_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:gerD_context.gif]] | ||
Revision as of 11:59, 13 May 2013
- Description: required for clustering of germinant receptors in the spore inner membrane
| Gene name | gerD |
| Synonyms | |
| Essential | no |
| Product | lipoprotein |
| Function | germination |
| Gene expression levels in SubtiExpress: gerD | |
| Interactions involving this protein in SubtInteract: GerD | |
| MW, pI | 20 kDa, 4.862 |
| Gene length, protein length | 555 bp, 185 aa |
| Immediate neighbours | salA, kbaA |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
germination, membrane proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU01550
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: required for clustering of germinant receptors in the spore inner membrane PubMed
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- has an N-terminal signal sequence and a signal for fixation to lipid PubMed
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P16450
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- expression level depends on sporulation conditions (medim composition, temperature) PubMed
- Regulatory mechanism:
- Additional information:
Biological materials
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody: available in Anne Moir lab
Labs working on this gene/protein
Anne Moir, University of Sheffield, UK
Your additional remarks
References
Additional references: PubMed
