Difference between revisions of "SigH"
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|style="background:#ABCDEF;" align="center"|'''Function''' || [[transcription]] of early stationary phase genes <br/>(sporulation, competence) | |style="background:#ABCDEF;" align="center"|'''Function''' || [[transcription]] of early stationary phase genes <br/>(sporulation, competence) | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU00980 sigH] |
|- | |- | ||
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/SigH SigH] | |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/SigH SigH] | ||
| Line 24: | Line 24: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yacP]]'', ''[[rpmGB]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yacP]]'', ''[[rpmGB]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU00980 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU00980 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU00980 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:sigH_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:sigH_context.gif]] | ||
Revision as of 11:57, 13 May 2013
- Description: RNA polymerase sigma factor SigH
| Gene name | sigH |
| Synonyms | spo0H |
| Essential | no |
| Product | RNA polymerase sigma factor SigH |
| Function | transcription of early stationary phase genes (sporulation, competence) |
| Gene expression levels in SubtiExpress: sigH | |
| Interactions involving this protein in SubtInteract: SigH | |
| MW, pI | 25 kDa, 5.146 |
| Gene length, protein length | 654 bp, 218 aa |
| Immediate neighbours | yacP, rpmGB |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
transcription, sigma factors and their control
This gene is a member of the following regulons
The SigH regulon
The gene
Basic information
- Locus tag: BSU00980
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: sigma-70 factor family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P17869
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon: sigH (DBTBS)
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
- Charles Moran, Emory University, NC, USA homepage
Your additional remarks
References
Reviews
Michiel J L de Hoon, Patrick Eichenberger, Dennis Vitkup
Hierarchical evolution of the bacterial sporulation network.
Curr Biol: 2010, 20(17);R735-45
[PubMed:20833318]
[WorldCat.org]
[DOI]
(I p)
The SigH regulon
Robert A Britton, Patrick Eichenberger, Jose Eduardo Gonzalez-Pastor, Paul Fawcett, Rita Monson, Richard Losick, Alan D Grossman
Genome-wide analysis of the stationary-phase sigma factor (sigma-H) regulon of Bacillus subtilis.
J Bacteriol: 2002, 184(17);4881-90
[PubMed:12169614]
[WorldCat.org]
[DOI]
(P p)
Original Publications
