Difference between revisions of "YabC"
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|style="background:#ABCDEF;" align="center"|'''Function''' || rRNA modification | |style="background:#ABCDEF;" align="center"|'''Function''' || rRNA modification | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU00360 yabC] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 32 kDa, 5.518 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 32 kDa, 5.518 | ||
| Line 22: | Line 22: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yazA]]'', ''[[abrB]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yazA]]'', ''[[abrB]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU00360 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU00360 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU00360 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:yabC_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:yabC_context.gif]] | ||
Revision as of 11:54, 13 May 2013
- Description: similar to 16S rRNA methyltransferase
| Gene name | yabC |
| Synonyms | |
| Essential | no |
| Product | 16S rRNA methyltransferase |
| Function | rRNA modification |
| Gene expression levels in SubtiExpress: yabC | |
| MW, pI | 32 kDa, 5.518 |
| Gene length, protein length | 876 bp, 292 aa |
| Immediate neighbours | yazA, abrB |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU00360
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
- The E.coli homolog: rsmI
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: UPF0011 family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P37544
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Satoshi Kimura, Tsutomu Suzuki
Fine-tuning of the ribosomal decoding center by conserved methyl-modifications in the Escherichia coli 16S rRNA.
Nucleic Acids Res: 2010, 38(4);1341-52
[PubMed:19965768]
[WorldCat.org]
[DOI]
(I p)
