Difference between revisions of "BacF"

From SubtiWiki
Jump to: navigation, search
Line 20: Line 20:
 
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1197 bp, 399 aa  
 
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1197 bp, 399 aa  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywfH]]'', ''[[bacE]]''
+
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[bacG]]'', ''[[bacE]]''
 
|-
 
|-
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15796&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15796&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
Line 35: Line 35:
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
 
 
 
<br/><br/>
 
<br/><br/>
  
Line 110: Line 106:
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=bacF_3868287_3869486_-1 bacF] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=bacF_3868287_3869486_-1 bacF] {{PubMed|22383849}}
  
* '''Sigma factor:''' [[SigA]] {{PubMed|19801406}}
+
* '''[[Sigma factor]]:''' [[SigA]] {{PubMed|19801406}}
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
Line 140: Line 136:
  
 
=References=
 
=References=
'''Additional publications:''' {{PubMed|12697329,21709425}}
+
<pubmed> 12372825 19801406 20052993 21948839 12697329,21709425</pubmed>
<pubmed> 12372825 19801406 20052993 21948839</pubmed>
 
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 14:34, 27 March 2013

  • Description: aminotransferase involved in bacilysin synthesis

Gene name bacF
Synonyms ywfG, ipa-85d
Essential no
Product aminotransferase
Function biosynthesis of the antibiotic bacilysin
Gene expression levels in SubtiExpress: bacF
MW, pI 44 kDa, 5.347
Gene length, protein length 1197 bp, 399 aa
Immediate neighbours bacG, bacE
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YwfG context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
BacF expression.png















Categories containing this gene/protein

miscellaneous metabolic pathways, biosynthesis of antibacterial compounds

This gene is a member of the following regulons

AbrB regulon, CodY regulon, ScoC regulon

The gene

Basic information

  • Locus tag: BSU37690

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: YwfG catalyzes transamination of tetrahydro-4-hydroxyphenylpyruvate (with L-Phe as amino donor), to form tetrahydrotyrosine PubMed
  • Protein family: class-I pyridoxal-phosphate-dependent aminotransferase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]

Additional information

Expression and regulation

  • Regulation:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References