Difference between revisions of "Transcription"
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* [[sigma factors]] | * [[sigma factors]] | ||
* [[RNA polymerase]] | * [[RNA polymerase]] | ||
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* ''[[nusG]]'' | * ''[[nusG]]'' | ||
* ''[[rho]]'' | * ''[[rho]]'' | ||
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| + | ==[http://bacillus-subtilis168.appspot.com/ A database for the time-resolved expression of all ''B. subtilis'' genes]== | ||
==Important publications== | ==Important publications== | ||
| − | <pubmed> 21350489 </pubmed> | + | <pubmed> 21350489 22087258 </pubmed> |
==Reviews== | ==Reviews== | ||
<pubmed>18599813 14527287 12455702 12213655 12073657 7708009 19489723 10329121 21478900 </pubmed> | <pubmed>18599813 14527287 12455702 12213655 12073657 7708009 19489723 10329121 21478900 </pubmed> | ||
=Back to [[categories]]= | =Back to [[categories]]= | ||
Revision as of 17:46, 18 November 2011
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Contents
Genes in this functional category
RNA polymerase
Sigma factors
- SigA: housekeeping sigma factor
- SigB: general stress sigma factor
- SigD: sigma factor for chemotaxis and motility genes
- SigE: early mother cell-specific sporulation sigma factor
- SigF: early forespore-specific sporulation sigma factor
- SigG: late forespore-specific sporulation sigma factor
- SigH: sigma factor that controls genes of the transition phase
- SigI:
- SigK: late mother cell-specific sporulation sigma factor
- SigL: enhancer-dependent sigma factor (Sigma-54 family)
- SigM: ECF sigma factor, controls genes required at high salt concentrations
- SigV: ECF sigma factor
- SigW: ECF sigma factor, mediates the transcriptional response to cell wall stress PubMed
- SigX: ECF sigma factor
- SigY: ECF sigma factor
- SigZ: ECF sigma factor
- Xpf
- YlaC
- YvrI-YvrH: (composite sigma factor)
Transcription elongation/ termination
A database for the time-resolved expression of all B. subtilis genes
Important publications
Evert-Jan Blom, Anja N J A Ridder, Andrzej T Lulko, Jos B T M Roerdink, Oscar P Kuipers
Time-resolved transcriptomics and bioinformatic analyses reveal intrinsic stress responses during batch culture of Bacillus subtilis.
PLoS One: 2011, 6(11);e27160
[PubMed:22087258]
[WorldCat.org]
[DOI]
(I p)
Houra Merrikh, Cristina Machón, William H Grainger, Alan D Grossman, Panos Soultanas
Co-directional replication-transcription conflicts lead to replication restart.
Nature: 2011, 470(7335);554-7
[PubMed:21350489]
[WorldCat.org]
[DOI]
(I p)
Reviews
Thomas J Santangelo, Irina Artsimovitch
Termination and antitermination: RNA polymerase runs a stop sign.
Nat Rev Microbiol: 2011, 9(5);319-29
[PubMed:21478900]
[WorldCat.org]
[DOI]
(I p)
Evgeny Nudler
RNA polymerase active center: the molecular engine of transcription.
Annu Rev Biochem: 2009, 78;335-61
[PubMed:19489723]
[WorldCat.org]
[DOI]
(I p)
P J Lewis, G P Doherty, J Clarke
Transcription factor dynamics.
Microbiology (Reading): 2008, 154(Pt 7);1837-1844
[PubMed:18599813]
[WorldCat.org]
[DOI]
(P p)
Tanja M Gruber, Carol A Gross
Multiple sigma subunits and the partitioning of bacterial transcription space.
Annu Rev Microbiol: 2003, 57;441-66
[PubMed:14527287]
[WorldCat.org]
[DOI]
(P p)
Sergei Borukhov, Konstantin Severinov
Role of the RNA polymerase sigma subunit in transcription initiation.
Res Microbiol: 2002, 153(9);557-62
[PubMed:12455702]
[WorldCat.org]
[DOI]
(P p)
Paul Gollnick, Paul Babitzke
Transcription attenuation.
Biochim Biophys Acta: 2002, 1577(2);240-50
[PubMed:12213655]
[WorldCat.org]
[DOI]
(P p)
John D Helmann
The extracytoplasmic function (ECF) sigma factors.
Adv Microb Physiol: 2002, 46;47-110
[PubMed:12073657]
[WorldCat.org]
[DOI]
(P p)
E Nudler
Transcription elongation: structural basis and mechanisms.
J Mol Biol: 1999, 288(1);1-12
[PubMed:10329121]
[WorldCat.org]
[DOI]
(P p)
W G Haldenwang
The sigma factors of Bacillus subtilis.
Microbiol Rev: 1995, 59(1);1-30
[PubMed:7708009]
[WorldCat.org]
[DOI]
(P p)
