Difference between revisions of "LiaF"

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(Expression and regulation)
Line 109: Line 109:
 
* '''Regulation:'''  
 
* '''Regulation:'''  
 
** ''[[liaI]]'': induced by bacitracin ([[LiaR]]) {{PubMed|16816187}}
 
** ''[[liaI]]'': induced by bacitracin ([[LiaR]]) {{PubMed|16816187}}
** ''[[liaI]]'':repressed during logarithmic growth ([[AbrB]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/15101989,17660417 PubMed]
+
** ''[[liaI]]'':repressed during logarithmic growth ([[AbrB]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/15101989,17660417 PubMed], indirect regulation by [[AbrB]] {{PubMed|20817675}}
 
** ''[[liaG]]'': constitutive
 
** ''[[liaG]]'': constitutive
  
 
* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
 
** [[LiaR]]: transcription activation {{PubMed|16816187}}
 
** [[LiaR]]: transcription activation {{PubMed|16816187}}
** [[AbrB]]:  transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/15101989,17660417 PubMed]
 
  
 
* '''Additional information:'''
 
* '''Additional information:'''

Revision as of 17:12, 30 May 2011

  • Description: negative effector of LiaR

Gene name liaF
Synonyms yvqF
Essential no
Product negative effector of LiaR
Function control of LiaR activity
MW, pI 26 kDa, 9.211
Gene length, protein length 723 bp, 241 aa
Immediate neighbours liaS, liaG
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YvqF context.gif
This image was kindly provided by SubtiList



Categories containing this gene/protein

transcription factors and their control, resistance against oxidative and electrophile stress, resistance against toxins/ antibiotics, membrane proteins

This gene is a member of the following regulons

AbrB regulon, LiaR regulon

The gene

Basic information

  • Locus tag: BSU33100

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization: cell membrane (according to Swiss-Prot)

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References