Difference between revisions of "YvrL"
| Line 1: | Line 1: | ||
| − | * '''Description:''' anti-Sig(YvrI-YvrHa) <br/><br/> | + | * '''Description:''' anti-Sig([[YvrI]]-[[YvrHa]]) <br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
| Line 10: | Line 10: | ||
|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Product''' || anti-Sig(YvrI-YvrHa) | + | |style="background:#ABCDEF;" align="center"| '''Product''' || anti-Sig([[YvrI]]-[[YvrHa]]) |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Function''' || control of Sig(YvrI-YvrHa) activity | + | |style="background:#ABCDEF;" align="center"|'''Function''' || control of Sig([[YvrI]]-[[YvrHa]]) activity |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 15 kDa, 9.427 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 15 kDa, 9.427 | ||
| Line 100: | Line 100: | ||
=Biological materials = | =Biological materials = | ||
| − | * '''Mutant:''' | + | * '''Mutant:''' TMB043 (erm), available in the [[Thorsten Mascher]] lab |
* '''Expression vector:''' | * '''Expression vector:''' | ||
Revision as of 18:54, 1 October 2009
| Gene name | yvrL |
| Synonyms | |
| Essential | no |
| Product | anti-Sig(YvrI-YvrHa) |
| Function | control of Sig(YvrI-YvrHa) activity |
| MW, pI | 15 kDa, 9.427 |
| Gene length, protein length | 408 bp, 136 aa |
| Immediate neighbours | oxdC, yvrN |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
The gene
Basic information
- Locus tag: BSU33250
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization: cell membrane (according to Swiss-Prot)
Database entries
- Structure:
- UniProt: O34686
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- [[Sigma factor]]: YvrI-YvrH PubMed
- Regulation: induced by acidic growth conditions PubMed
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant: TMB043 (erm), available in the Thorsten Mascher lab
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
John Helmann, Cornell University, USA Homepage
Your additional remarks
References
Shawn R MacLellan, John D Helmann, Haike Antelmann
The YvrI alternative sigma factor is essential for acid stress induction of oxalate decarboxylase in Bacillus subtilis.
J Bacteriol: 2009, 191(3);931-9
[PubMed:19047353]
[WorldCat.org]
[DOI]
(I p)
Shawn R MacLellan, Tina Wecke, John D Helmann
A previously unidentified sigma factor and two accessory proteins regulate oxalate decarboxylase expression in Bacillus subtilis.
Mol Microbiol: 2008, 69(4);954-67
[PubMed:18573182]
[WorldCat.org]
[DOI]
(I p)
