yhdI

yhdI
168

similar to transcriptional regulator (MocR/ GabR family)

Locus
BSU_09480
Molecular weight
52.60 kDa
Isoelectric point
6.8
Protein length
469 aaSequenceBlast
Gene length
1410 bpSequenceBlast
Function
unknown
Product
unknown
Essential
no
Synonyms
yhdI
Outlinks
BsubCyc SubtiList UniProt STRING Genoscapist PaperBLAST

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG1167 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
1,026,255 → 1,027,664
The protein
Protein family
class-I pyridoxal-phosphate-dependent aminotransferase family (according to UniProt)
MocR/ GabR family PubMed
Domains
N-terminal DNA-binding helix-turn-helix motif; C-terminal domain is homologous to PLP-binding large domain of aminotransferases.
HTH gntR-type domain (aa 13-81) (according to UniProt)
Cofactors
PLP
Structure
4MGR (PDB) (GabR, 40% identity) PubMed
O07578 (AlphaFold)
Expression and Regulation
Operons
Genes
yhdI
Description
PubMed
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yhdI

2025-03-04 09:48:25

Jstuelk

61

e90ed5cf6206940da791dcf90705f568fca71bf6

4A1EAE1864035A1C67B5C1E9AA1C5E2A5CA3DC97

Biological materials
Mutant
MGNA-B480 (yhdI::erm), available at the NBRP B. subtilis, Japan
BKE09480 (ΔyhdI::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATCTCATGTCTCCTTTGTA,  downstream forward: _UP4_TAAATAAAAAACAGGCCCCG
BKK09480 (ΔyhdI::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATCTCATGTCTCCTTTGTA,  downstream forward: _UP4_TAAATAAAAAACAGGCCCCG
References
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Page visits: 2039

Time of last update: 2025-04-03 11:44:17

Author of last update: Melvin.boenninger