Information processing

The major categories

1. Cellular processes
2. Metabolism
3. Information processing
4. Lifestyles
5. Prophages and mobile genetic elements
6. Groups of genes

3. Information processing

• 3.1. Genetics
  • 3.1.1. DNA replication
  • 3.1.2. DNA condensation/ segregation
  • 3.1.3. DNA restriction/ modification
  • 3.1.4. DNA repair/ recombination
  • 3.1.5. Genetic competence
  • 3.1.6. Genetics/ other
• 3.2. RNA synthesis and degradation
  • 3.2.1. Transcription
    • 3.2.1.1. RNA polymerase
    • 3.2.1.2. Sigma factors
    • 3.2.1.3. Transcription elongation/ termination
  • 3.2.2. RNA chaperones
  • 3.2.3. DEAD-box RNA helicases
  • 3.2.4. RNases
• 3.3. Protein synthesis, modification and degradation
  • 3.3.1. Translation
    • 3.3.1.1. Ribosomal RNA
    • 3.3.1.2. rRNA modification and maturation
    • 3.3.1.3. Ribosomal proteins
    • 3.3.1.4. Ribosome assembly
    • 3.3.1.5. tRNA
    • 3.3.1.6. tRNA modification and maturation
    • 3.3.1.7. Aminoacyl-tRNA synthetases
    • 3.3.1.8. Translation factors
    • 3.3.1.9. Translation/ other
  • 3.3.2. Chaperones/ protein folding
  • 3.3.3. Protein modification
    • 3.3.3.1. Protein maturation
    • 3.3.3.2. Protein kinases
    • 3.3.3.3. Protein phosphatases
    • 3.3.3.4. Protein acetylases/ deacetylases
    • 3.3.3.5. Protein modification/ other
  • 3.3.4. Protein secretion
  • 3.3.5. Proteolysis
• 3.4. Regulation of gene expression
  • 3.4.1. Sigma factors and their control
    • 3.4.1.1. Sigma factors
    • 3.4.1.2. Control of sigma factors
  • 3.4.2. Transcription factors and their control
    • 3.4.2.1. Two-component system response regulators
    • 3.4.2.2. Control of two-component response regulators
      • 3.4.2.2.1. Two-component sensor kinases
      • 3.4.2.2.2. Response regulator aspartate phosphatases
      • 3.4.2.2.3. Control of response regulators/ other
    • 3.4.2.3. PRD-type regulators
    • 3.4.2.4. Transcription factors/ other
    • 3.4.2.5. Control of transcription factors (other than two-component systems)
  • 3.4.3. Trigger enzymes
  • 3.4.4. RNA binding regulators
  • 3.4.5. Regulators of core metabolism
  • 3.4.6. Transition state regulators
  • 3.4.7. Phosphorelay
  • 3.4.8. Quorum sensing
  • 3.4.9. Other regulators