LplD

• Description: α-galacturonidase
  
  

Gene name	lplD
Synonyms
Essential	no
Product	α-galacturonidase
Function	utilization of pectin
Gene expression levels in SubtiExpress: lplD
MW, pI	49 kDa, 5.356
Gene length, protein length	1338 bp, 446 aa
Immediate neighbours	lplC, yetF
Sequences	Protein DNA DNA_with_flanks
Genetic context This image was kindly provided by SubtiList
Expression at a glance   PubMed

Categories containing this gene/protein

utilization of specific carbon sources, sporulation proteins

The gene

Basic information

• Locus tag: BSU07130

Database entries

• DBTBS entry: no entry

• SubtiList entry: [1]

The protein

Basic information/ Evolution

• Catalyzed reaction/ biological activity:
  • cleavage of α-1,4-di-galacturonate PubMed

• Protein family: glycosyl hydrolase 4 family PubMed

• Paralogous protein(s):

Extended information on the protein

• Kinetic information:

• Domains:
  • active site motif: CHEV PubMed

• Modification:

• Cofactor(s): NAD, Mn(2+) PubMed

• Effectors of protein activity:

• Interactions:

• Localization:

Database entries

• Structure: 3FEF

• UniProt: P39130

• KEGG entry: [2]

• E.C. number:

Expression and regulation

• Operon:

• Expression browser: lplD PubMed

• Sigma factor:

• Regulation:

• Regulatory mechanism:

• Additional information:

Biological materials

• Mutant:

• Expression vector:

• lacZ fusion:

• GFP fusion:

• two-hybrid system:

• Antibody:

References

John Thompson, Andreas Pikis, Jamie Rich, Barry G Hall, Stephen G Withers
α-Galacturonidase(s): a new class of Family 4 glycoside hydrolases with strict specificity and a unique CHEV active site motif.
FEBS Lett: 2013, 587(6);799-803
[PubMed:23416295] [WorldCat.org] [DOI] (I p)