PckA

• Description: phosphoenolpyruvate carboxykinase
  
  

Gene name	pckA
Synonyms	ppc
Essential	no
Product	phosphoenolpyruvate carboxykinase
Function	synthesis of phosphoenolpyruvate
Gene expression levels in SubtiExpress: pckA
Interactions involving this protein in SubtInteract: PckA
Metabolic function and regulation of this protein in SubtiPathways: Central C-metabolism
MW, pI	58,1 kDa, 5.12
Gene length, protein length	1581 bp, 527 amino acids
Immediate neighbours	metK, ytmB
Get the DNA and protein sequences (Barbe et al., 2009)
Genetic context This image was kindly provided by SubtiList
Expression at a glance   PubMed

Categories containing this gene/protein

carbon core metabolism

This gene is a member of the following regulons

CcpN regulon

The gene

Basic information

• Locus tag: BSU30560

Database entries

• DBTBS entry: [1]

• SubtiList entry: [2]

The protein

Basic information/ Evolution

• Catalyzed reaction/ biological activity: ATP + oxaloacetate = ADP + phosphoenolpyruvate + CO₂ (according to Swiss-Prot) ATP + oxaloacetate = ADP + phosphoenolpyruvate + CO(2)

• Protein family: phosphoenolpyruvate carboxykinase [ATP] family (according to Swiss-Prot) phosphoenolpyruvate carboxykinase [ATP] family

• Paralogous protein(s):

Extended information on the protein

• Kinetic information:

• Domains:
  • Nucleotide binding Domain (233–240)

• Modification:

• Cofactor(s):

• Effectors of protein activity:

• Interactions:
  • Mdh-PckA (this interaction occurs under gluconeogenic, but not under glycolytic conditions) PubMed

• Localization: cytoplasm (according to Swiss-Prot), cytoplasm

Database entries

• Structure: 2PXZ (E.coli)

• UniProt: P54418

• KEGG entry: [3]

• E.C. number: 4.1.1.49

Expression and regulation

• Operon: pckA PubMed

• Expression browser: pckA PubMed

• Sigma factor: SigA PubMed

• Regulation:
  • repressed by glucose (35-fold) CcpN PubMed

• Regulatory mechanism:
  • CcpN: transcription repression PubMed

• Additional information:

Biological materials

• Mutant:
  • 1A1005 ( pckA::spec), PubMed, available at BGSC

• Expression vector:
  • pGP1753 (N-terminal Strep-tag, for SPINE, purification from B. subtilis, in pGP380) (available in Stülke lab)
  • pGP1762 (for expression, purification in E. coli with N-terminal His-tag, in pWH844, available in Stülke lab)
  • pGP1763 (for expression, purification in E. coli with N-terminal Strep-tag, in pGP172, available in Stülke lab)

• lacZ fusion:

• GFP fusion:

• two-hybrid system: B. pertussis adenylate cyclase-based bacterial two hybrid system (BACTH), available in Stülke lab

• Antibody:

• FLAG-tag construct: GP1102 (spc, based on pGP1331), available in the Stülke lab

Labs working on this gene/protein

Stephane Aymerich, Microbiology and Molecular Genetics, INRA Paris-Grignon, France

References

Matthew L Ferguson, Dominique Le Coq, Matthieu Jules, Stéphane Aymerich, Ovidiu Radulescu, Nathalie Declerck, Catherine A Royer
Reconciling molecular regulatory mechanisms with noise patterns of bacterial metabolic promoters in induced and repressed states.
Proc Natl Acad Sci U S A: 2012, 109(1);155-60
[PubMed:22190493] [WorldCat.org] [DOI] (I p)

Frederik M Meyer, Jan Gerwig, Elke Hammer, Christina Herzberg, Fabian M Commichau, Uwe Völker, Jörg Stülke
Physical interactions between tricarboxylic acid cycle enzymes in Bacillus subtilis: evidence for a metabolon.
Metab Eng: 2011, 13(1);18-27
[PubMed:20933603] [WorldCat.org] [DOI] (I p)

Simon Tännler, Eliane Fischer, Dominique Le Coq, Thierry Doan, Emmanuel Jamet, Uwe Sauer, Stéphane Aymerich
CcpN controls central carbon fluxes in Bacillus subtilis.
J Bacteriol: 2008, 190(18);6178-87
[PubMed:18586936] [WorldCat.org] [DOI] (I p)

Pascale Servant, Dominique Le Coq, Stéphane Aymerich
CcpN (YqzB), a novel regulator for CcpA-independent catabolite repression of Bacillus subtilis gluconeogenic genes.
Mol Microbiol: 2005, 55(5);1435-51
[PubMed:15720552] [WorldCat.org] [DOI] (P p)

Hans-Matti Blencke, Georg Homuth, Holger Ludwig, Ulrike Mäder, Michael Hecker, Jörg Stülke
Transcriptional profiling of gene expression in response to glucose in Bacillus subtilis: regulation of the central metabolic pathways.
Metab Eng: 2003, 5(2);133-49
[PubMed:12850135] [WorldCat.org] [DOI] (P p)

Alia Lapidus, Nathalie Galleron, Alexei Sorokin, S Dusko Ehrlich
Sequencing and functional annotation of the Bacillus subtilis genes in the 200 kb rrnB-dnaB region.
Microbiology (Reading): 1997, 143 ( Pt 11);3431-3441
[PubMed:9387221] [WorldCat.org] [DOI] (P p)