Genome-wide analyses

The genome sequence

Valérie Barbe, Stéphane Cruveiller, Frank Kunst, Patricia Lenoble, Guillaume Meurice, Agnieszka Sekowska, David Vallenet, Tingzhang Wang, Ivan Moszer, Claudine Médigue, Antoine Danchin
From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later.
Microbiology (Reading): 2009, 155(Pt 6);1758-1775
[PubMed:19383706] [WorldCat.org] [DOI] (P p)

Daniel R Zeigler, Zoltán Prágai, Sabrina Rodriguez, Bastien Chevreux, Andrea Muffler, Thomas Albert, Renyuan Bai, Markus Wyss, John B Perkins
The origins of 168, W23, and other Bacillus subtilis legacy strains.
J Bacteriol: 2008, 190(21);6983-95
[PubMed:18723616] [WorldCat.org] [DOI] (I p)

F Kunst, N Ogasawara, I Moszer, A M Albertini, G Alloni, V Azevedo, M G Bertero, P Bessières, A Bolotin, S Borchert, R Borriss, L Boursier, A Brans, M Braun, S C Brignell, S Bron, S Brouillet, C V Bruschi, B Caldwell, V Capuano, N M Carter, S K Choi, J J Codani, I F Connerton, N J Cummings, R A Daniel, F Denizot, K M Devine, A Düsterhöft, S D Ehrlich, P T Emmerson, K D Entian, J Errington, C Fabret, E Ferrari, D Foulger, C Fritz, M Fujita, Y Fujita, S Fuma, A Galizzi, N Galleron, S Y Ghim, P Glaser, A Goffeau, E J Golightly, G Grandi, G Guiseppi, B J Guy, K Haga, J Haiech, C R Harwood, A Hènaut, H Hilbert, S Holsappel, S Hosono, M F Hullo, M Itaya, L Jones, B Joris, D Karamata, Y Kasahara, M Klaerr-Blanchard, C Klein, Y Kobayashi, P Koetter, G Koningstein, S Krogh, M Kumano, K Kurita, A Lapidus, S Lardinois, J Lauber, V Lazarevic, S M Lee, A Levine, H Liu, S Masuda, C Mauël, C Médigue, N Medina, R P Mellado, M Mizuno, D Moestl, S Nakai, M Noback, D Noone, M O'Reilly, K Ogawa, A Ogiwara, B Oudega, S H Park, V Parro, T M Pohl, D Portetelle, S Porwollik, A M Prescott, E Presecan, P Pujic, B Purnelle, G Rapoport, M Rey, S Reynolds, M Rieger, C Rivolta, E Rocha, B Roche, M Rose, Y Sadaie, T Sato, E Scanlan, S Schleich, R Schroeter, F Scoffone, J Sekiguchi, A Sekowska, S J Seror, P Serror, B S Shin, B Soldo, A Sorokin, E Tacconi, T Takagi, H Takahashi, K Takemaru, M Takeuchi, A Tamakoshi, T Tanaka, P Terpstra, A Tognoni, V Tosato, S Uchiyama, M Vandenbol, F Vannier, A Vassarotti, A Viari, R Wambutt, E Wedler, H Wedler, T Weitzenegger, P Winters, A Wipat, H Yamamoto, K Yamane, K Yasumoto, K Yata, K Yoshida, H F Yoshikawa, E Zumstein, H Yoshikawa, A Danchin
The complete genome sequence of the gram-positive bacterium Bacillus subtilis.
Nature: 1997, 390(6657);249-56
[PubMed:9384377] [WorldCat.org] [DOI] (P p)

Transcript analysis

Andreas Otto, Jörg Bernhardt, Hanna Meyer, Marc Schaffer, Florian-A Herbst, Juliane Siebourg, Ulrike Mäder, Michael Lalk, Michael Hecker, Dörte Becher
Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.
Nat Commun: 2010, 1;137
[PubMed:21266987] [WorldCat.org] [DOI] (I p)

Bang-Ce Ye, Yan Zhang, Hui Yu, Wen-Bang Yu, Bao-Hong Liu, Bin-Cheng Yin, Chun-Yun Yin, Yuan-Yuan Li, Ju Chu, Si-Liang Zhang
Time-resolved transcriptome analysis of Bacillus subtilis responding to valine, glutamate, and glutamine.
PLoS One: 2009, 4(9);e7073
[PubMed:19763274] [WorldCat.org] [DOI] (I e)

Simon Rasmussen, Henrik Bjørn Nielsen, Hanne Jarmer
The transcriptionally active regions in the genome of Bacillus subtilis.
Mol Microbiol: 2009, 73(6);1043-57
[PubMed:19682248] [WorldCat.org] [DOI] (I p)

Proteome analysis

Andreas Otto, Jörg Bernhardt, Hanna Meyer, Marc Schaffer, Florian-A Herbst, Juliane Siebourg, Ulrike Mäder, Michael Lalk, Michael Hecker, Dörte Becher
Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.
Nat Commun: 2010, 1;137
[PubMed:21266987] [WorldCat.org] [DOI] (I p)

Hannes Hahne, Susanne Wolff, Michael Hecker, Dörte Becher
From complementarity to comprehensiveness--targeting the membrane proteome of growing Bacillus subtilis by divergent approaches.
Proteomics: 2008, 8(19);4123-36
[PubMed:18763711] [WorldCat.org] [DOI] (I p)

Ulf Gerth, Holger Kock, Ilja Kusters, Stephan Michalik, Robert L Switzer, Michael Hecker
Clp-dependent proteolysis down-regulates central metabolic pathways in glucose-starved Bacillus subtilis.
J Bacteriol: 2008, 190(1);321-31
[PubMed:17981983] [WorldCat.org] [DOI] (I p)

Christine Eymann, Dörte Becher, Jörg Bernhardt, Katrin Gronau, Anja Klutzny, Michael Hecker
Dynamics of protein phosphorylation on Ser/Thr/Tyr in Bacillus subtilis.
Proteomics: 2007, 7(19);3509-26
[PubMed:17726680] [WorldCat.org] [DOI] (P p)

Boris Macek, Ivan Mijakovic, Jesper V Olsen, Florian Gnad, Chanchal Kumar, Peter R Jensen, Matthias Mann
The serine/threonine/tyrosine phosphoproteome of the model bacterium Bacillus subtilis.
Mol Cell Proteomics: 2007, 6(4);697-707
[PubMed:17218307] [WorldCat.org] [DOI] (P p)

Susanne Wolff, Haike Antelmann, Dirk Albrecht, Dörte Becher, Jörg Bernhardt, Sierd Bron, Knut Büttner, Jan Maarten van Dijl, Christine Eymann, Andreas Otto, Le Thi Tam, Michael Hecker
Towards the entire proteome of the model bacterium Bacillus subtilis by gel-based and gel-free approaches.
J Chromatogr B Analyt Technol Biomed Life Sci: 2007, 849(1-2);129-40
[PubMed:17055787] [WorldCat.org] [DOI] (P p)

Susanne Wolff, Andreas Otto, Dirk Albrecht, Jianru Stahl Zeng, Knut Büttner, Matthias Glückmann, Michael Hecker, Dörte Becher
Gel-free and gel-based proteomics in Bacillus subtilis: a comparative study.
Mol Cell Proteomics: 2006, 5(7);1183-92
[PubMed:16552027] [WorldCat.org] [DOI] (P p)

Christine Eymann, Annette Dreisbach, Dirk Albrecht, Jörg Bernhardt, Dörte Becher, Sandy Gentner, Le Thi Tam, Knut Büttner, Gerrit Buurman, Christian Scharf, Simone Venz, Uwe Völker, Michael Hecker
A comprehensive proteome map of growing Bacillus subtilis cells.
Proteomics: 2004, 4(10);2849-76
[PubMed:15378759] [WorldCat.org] [DOI] (P p)

Harold Tjalsma, Haike Antelmann, Jan D H Jongbloed, Peter G Braun, Elise Darmon, Ronald Dorenbos, Jean-Yves F Dubois, Helga Westers, Geeske Zanen, Wim J Quax, Oscar P Kuipers, Sierd Bron, Michael Hecker, Jan Maarten van Dijl
Proteomics of protein secretion by Bacillus subtilis: separating the "secrets" of the secretome.
Microbiol Mol Biol Rev: 2004, 68(2);207-33
[PubMed:15187182] [WorldCat.org] [DOI] (P p)