Talk:SubtiPathways

Discovered something unusual in the diagrams? Please leave a comment in the corresponding section!

General comments about all diagrams

• There seem to be some compatibility problems using Google Chrome. Nonetheless, Mozilla Firefox, Netscape, Microsoft Explorer, Safari, and Opera are working properly.
• Comments in brackets have been changed in the original files, but have not been uploaded yet.

Carbon metabolism

Central carbon metabolism

• Please check whether the "y" genes in the diagrams have already new names. For example, yqjH is polY1. If you are on the PolY1 page in subtiwiki and you get the link to the pathway it is not obvious whtat to look for (PolY1) is not in the list. Jörg

Utilization of different carbon sources

• (sugar between gluconate and xylose = beta-xylosides)

Cellwall

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CoA synthesis

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Folate biosynthesis

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Menaquinone

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Nitrogen and amino acid metabolism

Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)

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Alanine, glycine, serine

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Aspartate, asparagine

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Cysteine, methionine

• Eventuell Einbindung von Extramarkern für die S-Box (bzw. alle riboswitches)???? Es gibt ja dafür extra Seiten im Subtiwiki.

Histidine

• Description for HutU

Isoleucine, valine, leucine

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Lysine, threonine

• SpoVF hieß das früher, jetzt sind es zwei Proteine (SpoVFA und SpoVFB), die kommen ja auch im Regulationsteil vor und sind richtig zu SubtiWiki verlinkt. Man sollte da also oben auch den Komplex aus beiden reinmachen und dann das Popup-Fenster entspechend verändern. Ich kopiere diese Message auhc mal auf die SubtiPathways-Wishlist, dann könnte das in einer größeren Überarbeitungsaktion mal in Angriff genommen werden.

Phenylalanine, tyrosine, tryptophan

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Proline

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Nucleotides

Gene regulation of nucleotides

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Nucleosides catabolism

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Purine metabolism

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Purines catabolism

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Purines salvage pathways

• (RelA muss groß geschrieben werden)

Pyrimidines metabolism

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Stress response

• (PurP muss PurS sein)
• (SpoVt muss SpoVT sein)
• (sigB groß)

Sulfate assimilation

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tRNA charging

• Arne, wir hatten doch eine Extra-Diskussion über die Rolle von TilS. Das fehlt hier aber! Jörg