Difference between revisions of "AppF"
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=== Additional information=== | === Additional information=== | ||
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=The protein= | =The protein= | ||
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* '''Kinetic information:''' | * '''Kinetic information:''' | ||
| − | * '''Domains:''' | + | * '''[[Domains]]:''' |
* '''Modification:''' | * '''Modification:''' | ||
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* '''Mutant:''' | * '''Mutant:''' | ||
| + | ** GP2100 (D(''[[appD]]-[[appF]]-[[appA]]-[[appB]]-[[appC]]'')::''spc''), available in [[Jörg Stülke]]'s lab | ||
* '''Expression vector:''' | * '''Expression vector:''' | ||
Revision as of 08:50, 20 July 2015
- Description: oligopeptide ABC transporter (ATP-binding protein)
| Gene name | appF |
| Synonyms | |
| Essential | no |
| Product | oligopeptide ABC transporter (ATP-binding protein)) |
| Function | uptake of oligopeptides |
| Gene expression levels in SubtiExpress: appF | |
| Interactions involving this protein in SubtInteract: AppF | |
| Metabolic function and regulation of this protein in SubtiPathways: appF | |
| MW, pI | 36 kDa, 9.645 |
| Gene length, protein length | 987 bp, 329 aa |
| Immediate neighbours | appD, appA/1 |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
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Contents
Categories containing this gene/protein
ABC transporters, utilization of nitrogen sources other than amino acids, membrane proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU11370
Phenotypes of a mutant
Database entries
- BsubCyc: BSU11370
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: ABC transporter domain (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization: attached to the cell membrane (via AppB-AppC) PubMed
Database entries
- BsubCyc: BSU11370
- Structure:
- UniProt: P42065
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Sigma factor:
- Regulation:
- Additional information:
- number of protein molecules per cell (complex medium with amino acids, without glucose): 279 PubMed
Biological materials
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Virginie Molle, Yoshiko Nakaura, Robert P Shivers, Hirotake Yamaguchi, Richard Losick, Yasutaro Fujita, Abraham L Sonenshein
Additional targets of the Bacillus subtilis global regulator CodY identified by chromatin immunoprecipitation and genome-wide transcript analysis.
J Bacteriol: 2003, 185(6);1911-22
[PubMed:12618455]
[WorldCat.org]
[DOI]
(P p)
A Koide, M Perego, J A Hoch
ScoC regulates peptide transport and sporulation initiation in Bacillus subtilis.
J Bacteriol: 1999, 181(13);4114-7
[PubMed:10383984]
[WorldCat.org]
[DOI]
(P p)
Y Quentin, G Fichant, F Denizot
Inventory, assembly and analysis of Bacillus subtilis ABC transport systems.
J Mol Biol: 1999, 287(3);467-84
[PubMed:10092453]
[WorldCat.org]
[DOI]
(P p)
A Koide, J A Hoch
Identification of a second oligopeptide transport system in Bacillus subtilis and determination of its role in sporulation.
Mol Microbiol: 1994, 13(3);417-26
[PubMed:7997159]
[WorldCat.org]
[DOI]
(P p)
