Difference between revisions of "PghB"
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|style="background:#ABCDEF;" align="center"|'''Gene name''' | |style="background:#ABCDEF;" align="center"|'''Gene name''' | ||
| − | |'' | + | |''pghB'' |
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| − | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' '' | + | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yjqB '' |
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
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|style="background:#ABCDEF;" align="center"|'''Function''' || polyglutamic acid degradation | |style="background:#ABCDEF;" align="center"|'''Function''' || polyglutamic acid degradation | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU12480 | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU12480 pghB] |
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 22 kDa, 6.424 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 22 kDa, 6.424 | ||
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* '''Operon:''' | * '''Operon:''' | ||
| − | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yjqB_1319011_1319613_1 | + | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yjqB_1319011_1319613_1 pghB] {{PubMed|22383849}} |
* '''[[Sigma factor]]:''' | * '''[[Sigma factor]]:''' | ||
Revision as of 08:50, 13 July 2015
- Description: phage-derived gamma polyglutamic acid hydrolase
| Gene name | pghB |
| Synonyms | yjqB |
| Essential | no |
| Product | phage-derived gamma polyglutamic acid hydrolase |
| Function | polyglutamic acid degradation |
| Gene expression levels in SubtiExpress: pghB | |
| MW, pI | 22 kDa, 6.424 |
| Gene length, protein length | 600 bp, 200 aa |
| Immediate neighbours | yjqA, yjqC |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
capsule biosynthesis and degradation, PBSX prophage
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU12480
Phenotypes of a mutant
Database entries
- BsubCyc: BSU12480
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- hyhrolysis of polyglutamic acid PubMed
- Protein family: UPF0714 family (according to Swiss-Prot)
Extended information on the protein
- Kinetic information:
- Domains: DUF867 [2], gamma-PGA hydrolase domain PubMed
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- BsubCyc: BSU12480
- Structure:
- UniProt: O34785
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Stefania Mamberti, Paola Prati, Paolo Cremaschi, Claudio Seppi, Carlo F Morelli, Alessandro Galizzi, Massimo Fabbi, Cinzia Calvio
γ-PGA Hydrolases of Phage Origin in Bacillus subtilis and Other Microbial Genomes.
PLoS One: 2015, 10(7);e0130810
[PubMed:26158264]
[WorldCat.org]
[DOI]
(I e)
