Difference between revisions of "YrrK"
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=== Additional information=== | === Additional information=== | ||
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=The protein= | =The protein= | ||
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* '''Kinetic information:''' | * '''Kinetic information:''' | ||
| − | * '''Domains:''' | + | * '''[[Domains]]:''' |
| − | * '''Modification:''' | + | * '''Modification:''' |
| − | * ''' | + | * '''[[Cofactors]]:''' |
| − | * '''Effectors of protein activity:''' | + | * '''Effectors of protein activity:''' |
| − | * '''Interactions:''' | + | * '''[[SubtInteract|Interactions]]:''' |
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| + | * '''[[Localization]]:''' | ||
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=== Database entries === | === Database entries === | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yrrK_2797399_2797815_-1 yrrK] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yrrK_2797399_2797815_-1 yrrK] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' | + | * '''[[Sigma factor]]:''' |
* '''Regulation:''' | * '''Regulation:''' | ||
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=References= | =References= | ||
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[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 12:23, 26 March 2015
- Description: unknown
| Gene name | yrrK |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | unknown |
| Gene expression levels in SubtiExpress: yrrK | |
| MW, pI | 15 kDa, 5.325 |
| Gene length, protein length | 414 bp, 138 aa |
| Immediate neighbours | yrzB, yrzL |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU27390
Phenotypes of a mutant
Database entries
- BsubCyc: BSU27390
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: yqgF HJR family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Modification:
- Effectors of protein activity:
Database entries
- BsubCyc: BSU27390
- Structure: 1VHX
- UniProt: O34634
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Regulation:
- Regulatory mechanism:
- Additional information:
- number of protein molecules per cell (complex medium with amino acids, without glucose): 251 PubMed
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Tatsuaki Kurata, Shinobu Nakanishi, Masayuki Hashimoto, Masato Taoka, Yukiko Yamazaki, Toshiaki Isobe, Jun-Ichi Kato
Novel essential gene Involved in 16S rRNA processing in Escherichia coli.
J Mol Biol: 2015, 427(4);955-965
[PubMed:25545592]
[WorldCat.org]
[DOI]
(I p)
