Difference between revisions of "RghR"
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| − | * '''Description:''' repressor of ''[[rapD]]'', ''[[rapG]]'', ''[[rapH]]'' and ''[[yvaM]]'' <br/><br/> | + | * '''Description:''' transcriptional repressor ([[transcription factors of the Xre family|Xre family]]) of ''[[rapD]]'', ''[[rapG]]'', ''[[rapH]]'' and ''[[yvaM]]'' <br/><br/> |
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
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| − | |style="background:#ABCDEF;" align="center"| '''Product''' || transcriptional repressor | + | |style="background:#ABCDEF;" align="center"| '''Product''' || transcriptional repressor ([[transcription factors of the Xre family|Xre family]]) |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Function''' || regulation of sporulation initiation | + | |style="background:#ABCDEF;" align="center"|'''Function''' || regulation of [[sporulation]] initiation |
|- | |- | ||
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU33660 rghR] | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU33660 rghR] | ||
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<br/><br/><br/><br/> | <br/><br/><br/><br/> | ||
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= [[Categories]] containing this gene/protein = | = [[Categories]] containing this gene/protein = | ||
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=== Additional information=== | === Additional information=== | ||
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=The protein= | =The protein= | ||
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* '''Catalyzed reaction/ biological activity:''' | * '''Catalyzed reaction/ biological activity:''' | ||
| − | * '''Protein family:''' | + | * '''Protein family:''' ([[transcription factors of the Xre family|Xre family]]) |
* '''Paralogous protein(s):''' | * '''Paralogous protein(s):''' | ||
Revision as of 17:04, 11 June 2014
- Description: transcriptional repressor (Xre family) of rapD, rapG, rapH and yvaM
| Gene name | rghR |
| Synonyms | yvaN |
| Essential | no |
| Product | transcriptional repressor (Xre family) |
| Function | regulation of sporulation initiation |
| Gene expression levels in SubtiExpress: rghR | |
| Function and regulation of this protein in SubtiPathways: rghR | |
| MW, pI | 15 kDa, 6.179 |
| Gene length, protein length | 405 bp, 135 aa |
| Immediate neighbours | yvzC, yvaO |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
transcription factors and their control, phosphorelay
This gene is a member of the following regulons
The RghR regulon
The gene
Basic information
- Locus tag: BSU33660
Phenotypes of a mutant
Database entries
- BsubCyc: BSU33660
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: (Xre family)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- BsubCyc: BSU33660
- Structure:
- UniProt: O32236
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Mitsuo Ogura, Yasutaro Fujita
Bacillus subtilis rapD, a direct target of transcription repression by RghR, negatively regulates srfA expression.
FEMS Microbiol Lett: 2007, 268(1);73-80
[PubMed:17227471]
[WorldCat.org]
[DOI]
(P p)
Kentaro Hayashi, Tsukahara Kensuke, Kazuo Kobayashi, Naotake Ogasawara, Mitsuo Ogura
Bacillus subtilis RghR (YvaN) represses rapG and rapH, which encode inhibitors of expression of the srfA operon.
Mol Microbiol: 2006, 59(6);1714-29
[PubMed:16553878]
[WorldCat.org]
[DOI]
(P p)
