Difference between revisions of "RpsD"

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=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU29660&redirect=T BSU29660]
  
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/rpsD.html]
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/rpsD.html]
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=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU29660&redirect=T BSU29660]
  
 
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=1C06 1C06] (Geobacillus stearothermophilus)
 
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=1C06 1C06] (Geobacillus stearothermophilus)

Revision as of 14:31, 2 April 2014

Gene name rpsD
Synonyms
Essential yes PubMed
Product ribosomal protein S4 (BS4)
Function translation
Gene expression levels in SubtiExpress: rpsD
Interactions involving this protein in SubtInteract: RpsD
MW, pI 22 kDa, 10.243
Gene length, protein length 600 bp, 200 aa
Immediate neighbours dgcP, tyrS
Sequences Protein DNA DNA_with_flanks
Genetic context
RpsD context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
RpsD expression.png















Categories containing this gene/protein

translation, essential genes, universally conserved proteins

This gene is a member of the following regulons

stringent response

The gene

Basic information

  • Locus tag: BSU29660

Phenotypes of a mutant

essential PubMed

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure: 1C06 (Geobacillus stearothermophilus)
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • RelA dependent downregulation (Class I) during stringent response PubMed
    • autorepression of rpsD expression upon binding of excess RpsD to a RNA switch in the untranslated region of the rpsD mRNA PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References