Difference between revisions of "GamR"

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m (Jstuelk moved page YbgA to GamR: 24673833)
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|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
−
|''ybgA''
+
|''gamR''
 
|-
 
|-
−
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
+
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ybgA ''
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
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|style="background:#ABCDEF;" align="center"|'''Function''' || regulation of glucosamine utilization
 
|style="background:#ABCDEF;" align="center"|'''Function''' || regulation of glucosamine utilization
 
|-
 
|-
−
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU02370 ybgA]
+
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU02370 gamR]
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 26 kDa, 5.559   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 26 kDa, 5.559   
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= This gene is a member of the following [[regulons]] =
 
= This gene is a member of the following [[regulons]] =
−
{{SubtiWiki regulon|[[YbgA regulon]]}}
+
{{SubtiWiki regulon|[[GamR regulon]]}}
  
−
= The [[YbgA regulon]]: =
+
= The [[GamR regulon]]: =
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* ''[[gamA]]-[[gamP]]'', ''[[ybgA]]-[[ybgB]]''
+
* ''[[gamA]]-[[gamP]]'', ''[[gamR]]-[[ybgB]]''
 
=The gene=
 
=The gene=
  
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=== Additional information===
 
=== Additional information===
−
 
−
 
−
 
  
 
=The protein=
 
=The protein=
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* '''Catalyzed reaction/ biological activity:'''  
 
* '''Catalyzed reaction/ biological activity:'''  
  
−
* '''Protein family:'''
+
* '''Protein family:''' [[GntR family]] of transcription factors
  
 
* '''Paralogous protein(s):'''
 
* '''Paralogous protein(s):'''
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* '''Kinetic information:'''
 
* '''Kinetic information:'''
  
−
* '''Domains:'''  
+
* '''[[Domains]]:'''  
  
 
* '''Modification:'''
 
* '''Modification:'''
  
−
* '''Cofactor(s):'''
+
* '''[[Cofactors]]:'''
  
 
* '''Effectors of protein activity:'''
 
* '''Effectors of protein activity:'''
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=Expression and regulation=
 
=Expression and regulation=
  
−
* '''Operon:''' ''[[ybgA]]-[[ybgB]]'' {{PubMed|23667565}}  
+
* '''Operon:''' ''[[gamR]]-[[ybgB]]'' {{PubMed|23667565}}  
  
−
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ybgA_257791_258498_1 ybgA] {{PubMed|22383849}}
+
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ybgA_257791_258498_1 gamR] {{PubMed|22383849}}
  
 
* '''[[Sigma factor]]:''' [[SigA]] {{PubMed|23667565}}  
 
* '''[[Sigma factor]]:''' [[SigA]] {{PubMed|23667565}}  
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
−
** induced by glucosamine ([[YbgA]]) {{PubMed|23667565}}  
+
** induced by glucosamine ([[GamR]]) {{PubMed|23667565}}  
  
 
* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
−
** [[YbgA]]: transcription repression {{PubMed|23667565}}  
+
** [[GamR]]: transcription repression {{PubMed|23667565}}  
  
 
* '''Additional information:'''
 
* '''Additional information:'''
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=References=
 
=References=
−
<pubmed> 10627040 23667565 </pubmed>
+
<pubmed> 10627040 23667565 24673833 </pubmed>
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 07:39, 31 March 2014

Gene name gamR
Synonyms ybgA
Essential no
Product transcriptional regulator (GntR family)
Function regulation of glucosamine utilization
Gene expression levels in SubtiExpress: gamR
MW, pI 26 kDa, 5.559
Gene length, protein length 705 bp, 235 aa
Immediate neighbours gamA, ybgB
Sequences Protein DNA DNA_with_flanks
Genetic context
YbgA context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YbgA expression.png















Categories containing this gene/protein

cell wall degradation/ turnover, utilization of specific carbon sources, transcription factors and their control

This gene is a member of the following regulons

GamR regulon

The GamR regulon:

The gene

Basic information

  • Locus tag: BSU02370

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Modification:
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Isabelle Gaugué, Jacques Oberto, Jacqueline Plumbridge
Regulation of amino sugar utilization in Bacillus subtilis by the GntR family regulators, NagR and GamR.
Mol Microbiol: 2014, 92(1);100-15
[PubMed:24673833] [WorldCat.org] [DOI] (I p)

Isabelle Gaugué, Jacques Oberto, Harald Putzer, Jacqueline Plumbridge
The use of amino sugars by Bacillus subtilis: presence of a unique operon for the catabolism of glucosamine.
PLoS One: 2013, 8(5);e63025
[PubMed:23667565] [WorldCat.org] [DOI] (I e)

Jonathan Reizer, Steffi Bachem, Aiala Reizer, Maryvonne Arnaud, Milton H Saier, Jörg Stülke
Novel phosphotransferase system genes revealed by genome analysis - the complete complement of PTS proteins encoded within the genome of Bacillus subtilis.
Microbiology (Reading): 1999, 145 ( Pt 12);3419-3429
[PubMed:10627040] [WorldCat.org] [DOI] (P p)

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