Difference between revisions of "YugI"

From SubtiWiki
Jump to: navigation, search
Line 35: Line 35:
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
 
 
 
<br/><br/>
 
<br/><br/>
  
 
= [[Categories]] containing this gene/protein =
 
= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[proteins of unknown function]]}}
+
{{SubtiWiki category|[[proteins of unknown function]]}},
 +
[[most abundant proteins]]
  
 
= This gene is a member of the following [[regulons]] =
 
= This gene is a member of the following [[regulons]] =
Line 77: Line 74:
 
* '''Kinetic information:'''
 
* '''Kinetic information:'''
  
* '''Domains:'''  
+
* '''[[Domains]]:'''  
  
 
* '''Modification:'''
 
* '''Modification:'''
  
* '''Cofactor(s):'''
+
* '''[[Cofactors]]:'''
  
 
* '''Effectors of protein activity:'''
 
* '''Effectors of protein activity:'''
  
* '''Interactions:'''
+
* '''[[SubtInteract|Interactions]]:'''
  
* '''Localization:''' cytoplasm (according to Swiss-Prot)
+
* '''[[Localization]]:'''
 +
** cytoplasm (according to Swiss-Prot)
  
 
=== Database entries ===
 
=== Database entries ===
Line 118: Line 116:
 
** subject to Clp-dependent proteolysis upon glucose starvation {{PubMed|17981983}}
 
** subject to Clp-dependent proteolysis upon glucose starvation {{PubMed|17981983}}
 
** A [[ncRNA]] is predicted between ''[[yugI]]'' and ''[[alaT]]'' {{PubMed|20525796}}
 
** A [[ncRNA]] is predicted between ''[[yugI]]'' and ''[[alaT]]'' {{PubMed|20525796}}
 +
** belongs to the 100 [[most abundant proteins]] {{PubMed|15378759}}
  
 
=Biological materials =
 
=Biological materials =
Line 139: Line 138:
 
=References=
 
=References=
  
<pubmed> 17981983, 19152054 19636895 9274030 11948165 20525796</pubmed>
+
<pubmed> 17981983, 19152054 19636895 9274030 11948165 20525796 15378759</pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 16:41, 5 March 2014

  • Description: similar to a domain of E. coli polyribonucleotide phosphorylase and to four repeated domains at the N-terminus of E. coli ribosomal protein S1, has an RNA-binding surface

Gene name yugI
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yugI
MW, pI 14 kDa, 5.918
Gene length, protein length 390 bp, 130 aa
Immediate neighbours yuzA, alaT
Sequences Protein DNA DNA_with_flanks
Genetic context
YugI context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YugI expression.png















Categories containing this gene/protein

proteins of unknown function, most abundant proteins

This gene is a member of the following regulons

stringent response

The gene

Basic information

  • Locus tag: BSU31390

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Modification:
  • Effectors of protein activity:

Database entries

  • KEGG entry: [3]
  • E.C. number:

Additional information

  • subject to Clp-dependent proteolysis upon glucose starvation PubMed

Expression and regulation

  • Sigma factor:
  • Regulation:
    • RelA dependent downregulation (Class I) during stringent response PubMed
  • Regulatory mechanism:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References