Difference between revisions of "YlmE"
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| − | * '''Description:''' amino acid racemase, production of D-amino acids, control of [[biofilm formation]] <br/><br/> | + | * '''Description:''' putative amino acid racemase, production of D-amino acids, control of [[biofilm formation]] <br/><br/> |
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
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| − | |style="background:#ABCDEF;" align="center"| '''Product''' || amino acid racemase | + | |style="background:#ABCDEF;" align="center"| '''Product''' || putative amino acid racemase |
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|style="background:#ABCDEF;" align="center"|'''Function''' || control of [[biofilm formation]] | |style="background:#ABCDEF;" align="center"|'''Function''' || control of [[biofilm formation]] | ||
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=== Additional information=== | === Additional information=== | ||
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* '''Catalyzed reaction/ biological activity:''' | * '''Catalyzed reaction/ biological activity:''' | ||
| + | ** while the protein was described as an amino acid racemase important for biofilm formation {{PubMed|24097949}}, no racemase activity was detected in in vitro assays with a functionally active protein {{PubMed|24097949}} | ||
* '''Protein family:''' UPF0001 family (according to Swiss-Prot) | * '''Protein family:''' UPF0001 family (according to Swiss-Prot) | ||
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* '''Kinetic information:''' | * '''Kinetic information:''' | ||
| − | * '''Domains:''' | + | * '''[[Domains]]:''' |
* '''Modification:''' | * '''Modification:''' | ||
Revision as of 18:37, 21 December 2013
- Description: putative amino acid racemase, production of D-amino acids, control of biofilm formation
| Gene name | ylmE |
| Synonyms | |
| Essential | no |
| Product | putative amino acid racemase |
| Function | control of biofilm formation |
| Gene expression levels in SubtiExpress: ylmE | |
| MW, pI | 25 kDa, 5.546 |
| Gene length, protein length | 690 bp, 230 aa |
| Immediate neighbours | ylmD, sepF |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU15380
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: UPF0001 family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Modification:
- Effectors of protein activity:
Database entries
- Structure: 1W8G (the structure of YggS from E. coli 33% identity, 61% similarity)
- UniProt: O31727
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Tomokazu Ito, Jumpei Iimori, Sayuri Takayama, Akihito Moriyama, Ayako Yamauchi, Hisashi Hemmi, Tohru Yoshimura
Conserved pyridoxal protein that regulates Ile and Val metabolism.
J Bacteriol: 2013, 195(24);5439-49
[PubMed:24097949]
[WorldCat.org]
[DOI]
(I p)
Ilana Kolodkin-Gal, Diego Romero, Shugeng Cao, Jon Clardy, Roberto Kolter, Richard Losick
D-amino acids trigger biofilm disassembly.
Science: 2010, 328(5978);627-9
[PubMed:20431016]
[WorldCat.org]
[DOI]
(I p)
Leendert W Hamoen, Jean-Christophe Meile, Wouter de Jong, Philippe Noirot, Jeff Errington
SepF, a novel FtsZ-interacting protein required for a late step in cell division.
Mol Microbiol: 2006, 59(3);989-99
[PubMed:16420366]
[WorldCat.org]
[DOI]
(P p)
Virginie Molle, Masaya Fujita, Shane T Jensen, Patrick Eichenberger, José E González-Pastor, Jun S Liu, Richard Losick
The Spo0A regulon of Bacillus subtilis.
Mol Microbiol: 2003, 50(5);1683-701
[PubMed:14651647]
[WorldCat.org]
[DOI]
(P p)
