Difference between revisions of "Icd"

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(Extended information on the protein)
(Extended information on the protein)
Line 104: Line 104:
 
** homodimer [http://www.ncbi.nlm.nih.gov/pubmed/11290745 PubMed]
 
** homodimer [http://www.ncbi.nlm.nih.gov/pubmed/11290745 PubMed]
 
** [[CitZ]]-[[Mdh]]-[[Icd]] (this is the core of the TCA cycle metabolon)  {{PubMed|20933603}}
 
** [[CitZ]]-[[Mdh]]-[[Icd]] (this is the core of the TCA cycle metabolon)  {{PubMed|20933603}}
** [[Icd]]-[[Mdh]]  {{PubMed|24325460}}
+
** [[Mdh]]-[[Icd]]  {{PubMed|24325460}}
 
** [[GltA]]-[[Icd]]  {{PubMed|20933603}}
 
** [[GltA]]-[[Icd]]  {{PubMed|20933603}}
 
** [[OdhB]]-[[Icd]]  {{PubMed|20933603}}
 
** [[OdhB]]-[[Icd]]  {{PubMed|20933603}}

Revision as of 13:46, 12 December 2013

  • Description: isocitrate dehydrogenase

Gene name icd
Synonyms citC
Essential no
Product isocitrate dehydrogenase
Function TCA cycle
Gene expression levels in SubtiExpress: icd
Interactions involving this protein in SubtInteract: Icd
Metabolic function and regulation of this protein in SubtiPathways:
Central C-metabolism
MW, pI 46 kDa, 4.833
Gene length, protein length 1269 bp, 423 aa
Immediate neighbours mdh, citZ
Sequences Protein DNA DNA_with_flanks
Genetic context
Icd context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
Icd expression.png




























Categories containing this gene/protein

carbon core metabolism, membrane proteins, phosphoproteins

This gene is a member of the following regulons

CcpA regulon, CcpC regulon

The gene

Basic information

  • Locus tag: BSU29130

Phenotypes of a mutant

    • reduced ability to sporulate PubMed
    • growth and sporulation defects of the mutant could be partially bypassed by deletion of the major citrate synthase gene (citZ) PubMed

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: Isocitrate + NADP+ = 2-oxoglutarate + CO2 + NADPH (according to Swiss-Prot)
  • Protein family: isocitrate and isopropylmalate dehydrogenases family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information: Reversible Michaelis-Menten PubMed
  • Domains:
  • Modification:
  • Cofactor(s): Mg2+, Mn2+, NADP+
  • Effectors of protein activity:
    • Inhibited by glyoxylate, oxaloacetate and oxalomalate PubMed
      • Better inhibition when glyoxylate and oxaloacetate is combined, probably due to the non-enzymatic conversion into oxalomalate, which is a strong inhibitor PubMed

Database entries

  • KEGG entry: [3]

Additional information

  • This enzyme requires NADP+ exclusively. No activity was seen on the presence on NAD+ PubMed
  • extensive information on the structure and enzymatic properties of Icd can be found at Proteopedia

Expression and regulation

  • Regulatory mechanism:
    • CcpA: transcription repression, CcpC: transcription repression PubMed
    • CcpC: transcription repression (molecular inducer: citrate) PubMed
  • Additional information:

Biological materials

  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system: B. pertussis adenylate cyclase-based bacterial two hybrid system (BACTH), available in Jörg Stülke's lab

Labs working on this gene/protein

Linc Sonenshein, Tufts University, Boston, MA, USA Homepage

Your additional remarks

References