Difference between revisions of "YdeL"
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| − | * '''Description:''' similar to transcriptional regulator (MocR/ GabR family) <br/><br/> | + | * '''Description:''' similar to transcriptional regulator ([[MocR/ GabR family]]) <br/><br/> |
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* '''Catalyzed reaction/ biological activity:''' | * '''Catalyzed reaction/ biological activity:''' | ||
| − | * '''Protein family:''' MocR/ GabR family [http://www.ncbi.nlm.nih.gov/sites/entrez/22020104 PubMed] | + | * '''Protein family:''' [[MocR/ GabR family]] [http://www.ncbi.nlm.nih.gov/sites/entrez/22020104 PubMed] |
| − | * '''Paralogous protein(s):''' none, but there are 7 members of the MocR/ GabR family in ''B. subtilis'' | + | * '''Paralogous protein(s):''' none, but there are 7 members of the [[MocR/ GabR family]] in ''B. subtilis'' |
=== Extended information on the protein === | === Extended information on the protein === | ||
Revision as of 16:31, 21 November 2013
- Description: similar to transcriptional regulator (MocR/ GabR family)
| Gene name | ydeL |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | unknown |
| Gene expression levels in SubtiExpress: ydeL | |
| MW, pI | 53 kDa, 9.221 |
| Gene length, protein length | 1389 bp, 463 aa |
| Immediate neighbours | ydeK, ydeM |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
transcription factors and their control
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU05240
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: MocR/ GabR family PubMed
- Paralogous protein(s): none, but there are 7 members of the MocR/ GabR family in B. subtilis
Extended information on the protein
- Kinetic information:
- Domains: N-terminal DNA-binding helix-turn-helix motif; C-terminal domain is homologous to PLP-binding large domain of aminotransferases.
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- YdeL is a member of a suspected group of hubs proteins that were suggested to be involved in a large number of interactions PubMed
- Localization:
- nucleoid (Homogeneous) PubMed
Database entries
- Structure:
- UniProt: P96669
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
E Bramucci, T Milano, S Pascarella
Genomic distribution and heterogeneity of MocR-like transcriptional factors containing a domain belonging to the superfamily of the pyridoxal-5'-phosphate dependent enzymes of fold type I.
Biochem Biophys Res Commun: 2011, 415(1);88-93
[PubMed:22020104]
[WorldCat.org]
[DOI]
(I p)
Elodie Marchadier, Rut Carballido-López, Sophie Brinster, Céline Fabret, Peggy Mervelet, Philippe Bessières, Marie-Françoise Noirot-Gros, Vincent Fromion, Philippe Noirot
An expanded protein-protein interaction network in Bacillus subtilis reveals a group of hubs: Exploration by an integrative approach.
Proteomics: 2011, 11(15);2981-91
[PubMed:21630458]
[WorldCat.org]
[DOI]
(I p)
Jean-Christophe Meile, Ling Juan Wu, S Dusko Ehrlich, Jeff Errington, Philippe Noirot
Systematic localisation of proteins fused to the green fluorescent protein in Bacillus subtilis: identification of new proteins at the DNA replication factory.
Proteomics: 2006, 6(7);2135-46
[PubMed:16479537]
[WorldCat.org]
[DOI]
(P p)
