Difference between revisions of "CspR"

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* '''Description:''' rRNA methylase homolog <br/><br/>
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* '''Description:''' similar to tRNA (Um34/Cm34) methyltransferase  <br/><br/>
 
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{| align="right" border="1" cellpadding="2"  
 
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|style="background:#ABCDEF;" align="center"| '''Essential''' || yes [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || yes [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || rRNA methylase homolog
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|style="background:#ABCDEF;" align="center"| '''Product''' || tRNA (Um34/Cm34) methyltransferase homolog
 
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|-
 
|style="background:#ABCDEF;" align="center"|'''Function''' || translation  
 
|style="background:#ABCDEF;" align="center"|'''Function''' || translation  
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<br/><br/><br/><br/>
 
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<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
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* '''Catalyzed reaction/ biological activity:'''  
 
* '''Catalyzed reaction/ biological activity:'''  
 +
** catalyzes the methyl transfer from S-adenosyl-L-methionine to tRNA(Leu)(CAA) and tRNA(Leu)(UAA) isoacceptors {{PubMed|xxxxxx}}
  
 
* '''Protein family:'''
 
* '''Protein family:'''
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=== Database entries ===
 
=== Database entries ===
  
* '''Structure:'''
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* '''Structure:''' [http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId= 4JAK 4JAK] (from ''E. coli'', 45% identity, 72% similarity) {{PubMed|23804755}}
  
 
* '''UniProt:''' [http://www.uniprot.org/uniprot/O31590 O31590]
 
* '''UniProt:''' [http://www.uniprot.org/uniprot/O31590 O31590]
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cspR_970135_970617_1 cspR] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cspR_970135_970617_1 cspR] {{PubMed|22383849}}
  
* '''Sigma factor:'''  
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* '''[[Sigma factor]]:'''  
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
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=References=
 
=References=
 
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<pubmed> 23804755 </pubmed>
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 16:07, 29 July 2013

  • Description: similar to tRNA (Um34/Cm34) methyltransferase

Gene name cspR
Synonyms ygaR
Essential yes PubMed
Product tRNA (Um34/Cm34) methyltransferase homolog
Function translation
Gene expression levels in SubtiExpress: cspR
MW, pI 18 kDa, 6.054
Gene length, protein length 480 bp, 160 aa
Immediate neighbours yhbB, yhbD
Sequences Protein DNA DNA_with_flanks
Genetic context
CspR context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
CspR expression.png















Categories containing this gene/protein

translation, essential genes

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU08930

Phenotypes of a mutant

essential PubMed

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
    • catalyzes the methyl transfer from S-adenosyl-L-methionine to tRNA(Leu)(CAA) and tRNA(Leu)(UAA) isoacceptors PubMed
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References