Difference between revisions of "YbgB"
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=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' ''ybgB'' {{PubMed|12897008}} | + | * '''Operon:''' |
| + | ** ''[[ybgA]]-[[ybgB]]'' {{PubMed|23667565}} | ||
| + | ** ''[[ybgB]]'' {{PubMed|12897008}} | ||
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ybgB_258532_258807_1 ybgB] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ybgB_258532_258807_1 ybgB] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' [[SigY]] {{PubMed|12897008}} | + | * '''[[Sigma factor]]:''' |
| + | ** ''[[ybgA]]'': [[SigA]] {{PubMed|23667565}} | ||
| + | ** ''[[ybgB]]'': [[SigY]] {{PubMed|12897008}} | ||
* '''Regulation:''' | * '''Regulation:''' | ||
| + | ** induced by glucosamine ([[YbgA]]) {{PubMed|23667565}} | ||
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| + | ** [[YbgA]]: transcription repression {{PubMed|23667565}} | ||
* '''Additional information:''' | * '''Additional information:''' | ||
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=References= | =References= | ||
| − | <pubmed>12897008,, </pubmed> | + | <pubmed>12897008,23667565, </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 16:48, 24 May 2013
- Description: putative immunity protein
| Gene name | ybgB |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | unknown |
| Gene expression levels in SubtiExpress: ybgB | |
| MW, pI | 10 kDa, 8.47 |
| Gene length, protein length | 273 bp, 91 aa |
| Immediate neighbours | ybgA, ybgE |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
cell envelope stress proteins (controlled by SigM, V, W, X, Y), toxins, antitoxins and immunity against toxins, membrane proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU02380
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization: cell membrane (according to Swiss-Prot)
Database entries
- Structure:
- UniProt: O31460
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Isabelle Gaugué, Jacques Oberto, Harald Putzer, Jacqueline Plumbridge
The use of amino sugars by Bacillus subtilis: presence of a unique operon for the catabolism of glucosamine.
PLoS One: 2013, 8(5);e63025
[PubMed:23667565]
[WorldCat.org]
[DOI]
(I e)
Min Cao, Letal Salzberg, Ching Sung Tsai, Thorsten Mascher, Carla Bonilla, Tao Wang, Rick W Ye, Leticia Márquez-Magaña, John D Helmann
Regulation of the Bacillus subtilis extracytoplasmic function protein sigma(Y) and its target promoters.
J Bacteriol: 2003, 185(16);4883-90
[PubMed:12897008]
[WorldCat.org]
[DOI]
(P p)
