Difference between revisions of "BioW"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[bioA]]'', ''[[ytaP]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[bioA]]'', ''[[ytaP]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU30240 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU30240 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU30240 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU30240 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU30240 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU30240 DNA_with_flanks]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:bioW_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:bioW_context.gif]]

Revision as of 11:03, 14 May 2013

  • Description: 6-carboxyhexanoate-CoA ligase

Gene name bioW
Synonyms
Essential no
Product 6-carboxyhexanoate-CoA ligase)
Function biosynthesis of biotin
Gene expression levels in SubtiExpress: bioW
Metabolic function and regulation of this protein in SubtiPathways:
Biotin
MW, pI 29 kDa, 5.548
Gene length, protein length 777 bp, 259 aa
Immediate neighbours bioA, ytaP
Sequences Protein DNA DNA_with_flanks
Genetic context
BioW context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
BioW expression.png
























Categories containing this gene/protein

biosynthesis of cofactors

This gene is a member of the following regulons

BirA regulon

The gene

Basic information

  • Locus tag: BSU30240

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: ATP + 6-carboxyhexanoate + CoA = AMP + diphosphate + 6-carboxyhexanoyl-CoA (according to Swiss-Prot)
  • Protein family: bioW family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
    • repressed in the presence of biotin (BirA) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Reviews: PubMed

Original publications