Difference between revisions of "YbxI"

From SubtiWiki
Jump to: navigation, search
Line 22: Line 22:
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ybxH]]'', ''[[cypC]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ybxH]]'', ''[[cypC]]''
 
|-
 
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU02090 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU02090 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU02090 Advanced_DNA]
+
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU02090 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU02090 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU02090 DNA_with_flanks]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ybxI_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ybxI_context.gif]]

Revision as of 09:21, 14 May 2013

  • Description: beta-lactamase

Gene name ybxI
Synonyms ybdS
Essential no
Product beta-lactamase
Function unknown
Gene expression levels in SubtiExpress: ybxI
MW, pI 30 kDa, 6.839
Gene length, protein length 801 bp, 267 aa
Immediate neighbours ybxH, cypC
Sequences Protein DNA DNA_with_flanks
Genetic context
YbxI context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YbxI expression.png
























Categories containing this gene/protein

resistance against toxins/ antibiotics

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU02090

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: A beta-lactam + H2O = a substituted beta-amino acid (according to Swiss-Prot)
  • Protein family: class-D beta-lactamase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]

Additional information

Expression and regulation

  • Operon: ybxI (acc. to DBTBS)
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Birgit Voigt, Haike Antelmann, Dirk Albrecht, Armin Ehrenreich, Karl-Heinz Maurer, Stefan Evers, Gerhard Gottschalk, Jan Maarten van Dijl, Thomas Schweder, Michael Hecker
Cell physiology and protein secretion of Bacillus licheniformis compared to Bacillus subtilis.
J Mol Microbiol Biotechnol: 2009, 16(1-2);53-68
[PubMed:18957862] [WorldCat.org] [DOI] (I p)