Difference between revisions of "QdoR"

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|style="background:#ABCDEF;" align="center"|'''Function''' || control of quercetin utilization
 
|style="background:#ABCDEF;" align="center"|'''Function''' || control of quercetin utilization
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU39990 qdoR]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU39990 qdoR]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 20 kDa, 6.111   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 20 kDa, 6.111   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[qdoI]]'', ''[[yxnA]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[qdoI]]'', ''[[yxnA]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB16036&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU39990 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU39990 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU39990 Advanced_DNA]
 
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Revision as of 14:17, 13 May 2013

Gene name qdoR
Synonyms yxaF
Essential no
Product transcriptional regulator
Function control of quercetin utilization
Gene expression levels in SubtiExpress: qdoR
MW, pI 20 kDa, 6.111
Gene length, protein length 573 bp, 191 aa
Immediate neighbours qdoI, yxnA
Sequences Protein DNA Advanced_DNA
Genetic context
YxaF context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
QdoR expression.png


























Categories containing this gene/protein

transcription factors and their control, resistance against other toxic compounds (nitric oxide, phenolic acids, flavonoids, oxalate)

This gene is a member of the following regulons

LmrA regulon, QdoR regulon

The QdoR regulon:

The gene

Basic information

  • Locus tag: BSU39990

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s): LmrA

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity: flavonoids such as quercetin act as molecular inducers and result in release from DNA targets PubMed

Database entries

  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References