Difference between revisions of "YwcC"

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|style="background:#ABCDEF;" align="center"|'''Function''' || control of [[SlrA]] expression
 
|style="background:#ABCDEF;" align="center"|'''Function''' || control of [[SlrA]] expression
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU38220 ywcC]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU38220 ywcC]
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm]'''
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm]'''
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[gtaC]]'', ''[[slrA]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[gtaC]]'', ''[[slrA]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15848&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU38220 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU38220 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU38220 Advanced_DNA]
 
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Revision as of 14:10, 13 May 2013

  • Description: transcription repressor (TetR family), controls slrA expression

Gene name ywcC
Synonyms ipa-33d
Essential no
Product transcription repressor (TetR family)
Function control of SlrA expression
Gene expression levels in SubtiExpress: ywcC
Regulation of this protein in SubtiPathways:
Biofilm
MW, pI 25 kDa, 8.466
Gene length, protein length 669 bp, 223 aa
Immediate neighbours gtaC, slrA
Sequences Protein DNA Advanced_DNA
Genetic context
YwcC context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YwcC expression.png



















Categories containing this gene/protein

transcription factors and their control, biofilm formation

This gene is a member of the following regulons

The YwcC regulon:

The gene

Basic information

  • Locus tag: BSU38220

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References