Difference between revisions of "YwjD"
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|style="background:#ABCDEF;" align="center"|'''Function''' || protection of developing and dormant spores against UV DNA damage | |style="background:#ABCDEF;" align="center"|'''Function''' || protection of developing and dormant spores against UV DNA damage | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU37200 ywjD] |
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 36 kDa, 8.99 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 36 kDa, 8.99 | ||
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywjE]]'', ''[[ywjC]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywjE]]'', ''[[ywjC]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU37200 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU37200 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU37200 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:ywjD_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:ywjD_context.gif]] | ||
Revision as of 14:06, 13 May 2013
- Description: sporulation specific UV-damage-endonuclease
| Gene name | ywjD |
| Synonyms | |
| Essential | no |
| Product | UV-damage-endonuclease |
| Function | protection of developing and dormant spores against UV DNA damage |
| Gene expression levels in SubtiExpress: ywjD | |
| MW, pI | 36 kDa, 8.99 |
| Gene length, protein length | 960 bp, 320 aa |
| Immediate neighbours | ywjE, ywjC |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
DNA repair/ recombination, sporulation proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU37200
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: uve1/uvsE family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P45864
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Fernando H Ramírez-Guadiana, Marcelo Barraza-Salas, Norma Ramírez-Ramírez, Mayte Ortiz-Cortés, Peter Setlow, Mario Pedraza-Reyes
Alternative excision repair of ultraviolet B- and C-induced DNA damage in dormant and developing spores of Bacillus subtilis.
J Bacteriol: 2012, 194(22);6096-104
[PubMed:22961846]
[WorldCat.org]
[DOI]
(I p)
Pierre Nicolas, Ulrike Mäder, Etienne Dervyn, Tatiana Rochat, Aurélie Leduc, Nathalie Pigeonneau, Elena Bidnenko, Elodie Marchadier, Mark Hoebeke, Stéphane Aymerich, Dörte Becher, Paola Bisicchia, Eric Botella, Olivier Delumeau, Geoff Doherty, Emma L Denham, Mark J Fogg, Vincent Fromion, Anne Goelzer, Annette Hansen, Elisabeth Härtig, Colin R Harwood, Georg Homuth, Hanne Jarmer, Matthieu Jules, Edda Klipp, Ludovic Le Chat, François Lecointe, Peter Lewis, Wolfram Liebermeister, Anika March, Ruben A T Mars, Priyanka Nannapaneni, David Noone, Susanne Pohl, Bernd Rinn, Frank Rügheimer, Praveen K Sappa, Franck Samson, Marc Schaffer, Benno Schwikowski, Leif Steil, Jörg Stülke, Thomas Wiegert, Kevin M Devine, Anthony J Wilkinson, Jan Maarten van Dijl, Michael Hecker, Uwe Völker, Philippe Bessières, Philippe Noirot
Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis.
Science: 2012, 335(6072);1103-6
[PubMed:22383849]
[WorldCat.org]
[DOI]
(I p)
