Difference between revisions of "LigB"
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|style="background:#ABCDEF;" align="center"|'''Function''' || phage SP-beta replication | |style="background:#ABCDEF;" align="center"|'''Function''' || phage SP-beta replication | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU20500 ligB] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 30 kDa, 6.865 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 30 kDa, 6.865 | ||
| Line 22: | Line 22: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yoqW]]'', ''[[yoqU]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yoqW]]'', ''[[yoqU]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU20500 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU20500 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU20500 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:ligB_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:ligB_context.gif]] | ||
Revision as of 13:03, 13 May 2013
- Description: DNA ligase (ATP-dependent)
| Gene name | ligB |
| Synonyms | yoqV |
| Essential | no |
| Product | DNA ligase (ATP-dependent) |
| Function | phage SP-beta replication |
| Gene expression levels in SubtiExpress: ligB | |
| MW, pI | 30 kDa, 6.865 |
| Gene length, protein length | 810 bp, 270 aa |
| Immediate neighbours | yoqW, yoqU |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
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Contents
Categories containing this gene/protein
DNA replication, SP-beta prophage
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU20500
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: peptidase M32 family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: O31917
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
M A Petit, S D Ehrlich
The NAD-dependent ligase encoded by yerG is an essential gene of Bacillus subtilis.
Nucleic Acids Res: 2000, 28(23);4642-8
[PubMed:11095673]
[WorldCat.org]
[DOI]
(I p)
