Difference between revisions of "PutB"
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|style="background:#ABCDEF;" align="center"|'''Function''' || proline utilization | |style="background:#ABCDEF;" align="center"|'''Function''' || proline utilization | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU03200 putB] |
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/glutamate.html Ammonium/ glutamate]''' | |colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/glutamate.html Ammonium/ glutamate]''' | ||
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ycgL]]'', ''[[putC]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ycgL]]'', ''[[putC]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU03200 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU03200 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU03200 Advanced_DNA] |
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|colspan="2" | '''Genetic context''' <br/> [[Image:ycgM_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:ycgM_context.gif]] | ||
Revision as of 12:06, 13 May 2013
- Description: proline dehydrogenase (L-proline, NAD)
| Gene name | putB |
| Synonyms | ycgM |
| Essential | no |
| Product | proline dehydrogenase (L-proline, NAD) |
| Function | proline utilization |
| Gene expression levels in SubtiExpress: putB | |
| Metabolic function and regulation of this protein in SubtiPathways: Ammonium/ glutamate | |
| MW, pI | 34 kDa, 7.291 |
| Gene length, protein length | 909 bp, 303 aa |
| Immediate neighbours | ycgL, putC |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
This gene is a member of the following regulons
CodY regulon, PutR regulon, Spo0A regulon
The gene
Basic information
- Locus tag: BSU03200
Phenotypes of a mutant
- no growth with proline as single source of carbon or nitrogen PubMed
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: L-proline + acceptor = (S)-1-pyrroline-5-carboxylate + reduced acceptor (according to Swiss-Prot)
- Protein family: proline dehydrogenase family (according to Swiss-Prot)
- Paralogous protein(s): FadM
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P94390
- KEGG entry: [3]
- E.C. number: 1.5.99.8
Additional information
Expression and regulation
- Operon: putB-putC-putP 22139509 PubMed
- Regulation:
- Regulatory mechanism:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Additional publications: PubMed
