Difference between revisions of "XkdJ"
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= This gene is a member of the following [[regulons]] = | = This gene is a member of the following [[regulons]] = | ||
| − | {{SubtiWiki regulon|[[Xpf regulon]]}} | + | {{SubtiWiki regulon|[[Xpf regulon]]}}, |
| + | [[Efp-dependent proteins]] | ||
=The gene= | =The gene= | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=xkdJ_1331743_1332183_1 xkdJ] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=xkdJ_1331743_1332183_1 xkdJ] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' [[Xpf]] {{PubMed|8083174}} | + | * '''[[Sigma factor]]:''' [[Xpf]] {{PubMed|8083174}} |
* '''Regulation:''' | * '''Regulation:''' | ||
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* '''Additional information:''' | * '''Additional information:''' | ||
| + | ** [[translation]] is likely to require [[Efp]] due to the presence of several consecutive proline residues {{PubMed|23239624,23239623}} | ||
=Biological materials = | =Biological materials = | ||
Revision as of 19:25, 29 April 2013
- Description: PBSX prophage
| Gene name | xkdJ |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | unknown |
| Gene expression levels in SubtiExpress: xkdJ | |
| MW, pI | 16 kDa, 4.873 |
| Gene length, protein length | 438 bp, 146 aa |
| Immediate neighbours | xkdI, ykzM |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
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Contents
Categories containing this gene/protein
This gene is a member of the following regulons
Xpf regulon, Efp-dependent proteins
The gene
Basic information
- Locus tag: BSU12640
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P54330
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- Regulatory mechanism:
- Additional information:
- translation is likely to require Efp due to the presence of several consecutive proline residues PubMed
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
G E McDonnell, H Wood, K M Devine, D J McConnell
Genetic control of bacterial suicide: regulation of the induction of PBSX in Bacillus subtilis.
J Bacteriol: 1994, 176(18);5820-30
[PubMed:8083174]
[WorldCat.org]
[DOI]
(P p)
H E Wood, M T Dawson, K M Devine, D J McConnell
Characterization of PBSX, a defective prophage of Bacillus subtilis.
J Bacteriol: 1990, 172(5);2667-74
[PubMed:2110147]
[WorldCat.org]
[DOI]
(P p)
