Difference between revisions of "YdbD"
m (Reverted edits by 134.76.70.252 (talk) to last revision by Jstuelk) |
m (Reverted edits by Jstuelk (talk) to last revision by 134.76.70.252) |
||
| Line 1: | Line 1: | ||
| − | + | ||
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
| Line 13: | Line 13: | ||
|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || survival of ethanol stress | |style="background:#ABCDEF;" align="center"|'''Function''' || survival of ethanol stress | ||
| + | |- | ||
| + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU04430 ydbD] | ||
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 30 kDa, 4.858 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 30 kDa, 4.858 | ||
| Line 24: | Line 26: | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:ydbD_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:ydbD_context.gif]] | ||
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div> | <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div> | ||
| + | |- | ||
| + | |colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydbD_495740_496561_-1 Expression at a glance]'''   {{PubMed|22383849}}<br/>[[Image:ydbD_expression.png|500px]] | ||
|- | |- | ||
|} | |} | ||
__TOC__ | __TOC__ | ||
| + | <br/><br/><br/><br/> | ||
| + | <br/><br/><br/><br/> | ||
| + | <br/><br/><br/><br/> | ||
| + | <br/><br/><br/><br/> | ||
| + | <br/><br/><br/><br/> | ||
| + | |||
<br/><br/> | <br/><br/> | ||
| Line 101: | Line 111: | ||
** ''[[ydbD]]'' | ** ''[[ydbD]]'' | ||
| − | * '''[ | + | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydbD_495740_496561_-1 ydbD] {{PubMed|22383849}} |
| + | |||
| + | * '''Sigma factor:''' | ||
** ''ydbD'': [[SigB]] [http://www.ncbi.nlm.nih.gov/pubmed/15805528 PubMed] | ** ''ydbD'': [[SigB]] [http://www.ncbi.nlm.nih.gov/pubmed/15805528 PubMed] | ||
Revision as of 11:49, 7 August 2012
| Gene name | ydbD |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | survival of ethanol stress |
| Gene expression levels in SubtiExpress: ydbD | |
| MW, pI | 30 kDa, 4.858 |
| Gene length, protein length | 819 bp, 273 aa |
| Immediate neighbours | ydbC, dctB |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
general stress proteins (controlled by SigB), resistance against oxidative and electrophile stress
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU04430
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: 2 H2O2 = O2 + 2 H2O (according to Swiss-Prot)
- Protein family: manganese catalase family (according to Swiss-Prot)
- Paralogous protein(s): YjqC
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P80878
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
