Difference between revisions of "YbxF"

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* '''Description:''' similar to [[ribosomal protein]] L7 family, associated with the ribosome during  exponential growth <br/><br/>
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* '''Description:''' similar to [[ribosomal protein]] L7AE family, associated with the ribosome during  exponential growth, binds K-turns in [[RNA switch]]es <br/><br/>
  
 
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* '''Catalyzed reaction/ biological activity:'''  
 
* '''Catalyzed reaction/ biological activity:'''  
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** binds K-turns in [[RNA switch]]es as the occur in the [[L-box]], the [[S-box]] and the [[T-box]] {{PubMed|22355167}}
  
 
* '''Protein family:''' [[ribosomal protein]] L7Ae family (according to Swiss-Prot)
 
* '''Protein family:''' [[ribosomal protein]] L7Ae family (according to Swiss-Prot)
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=References=
 
=References=
 
'''Additional publications:''' {{PubMed|17468242}}  
 
'''Additional publications:''' {{PubMed|17468242}}  
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<pubmed> 22355167</pubmed>
 
<pubmed>11948165</pubmed>
 
<pubmed>11948165</pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 15:26, 23 February 2012

Gene name ybxF
Synonyms ybaB
Essential no
Product unknown
Function unknown
Interactions involving this protein in SubtInteract: YbxF
MW, pI 8 kDa, 9.511
Gene length, protein length 246 bp, 82 aa
Immediate neighbours rpoC, rpsL
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YbxF context.gif
This image was kindly provided by SubtiList



Categories containing this gene/protein

translation

This gene is a member of the following regulons

stringent response

The gene

Basic information

  • Locus tag: BSU01090

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
    • RelA dependent downregulation (Class I) during stringent response PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed

Nathan J Baird, Jinwei Zhang, Tomoko Hamma, Adrian R Ferré-D'Amaré
YbxF and YlxQ are bacterial homologs of L7Ae and bind K-turns but not K-loops.
RNA: 2012, 18(4);759-70
[PubMed:22355167] [WorldCat.org] [DOI] (I p)