Difference between revisions of "Dra"

From SubtiWiki
Jump to: navigation, search
(Extended information on the protein)
m (add synonym)
Line 6: Line 6:
 
|''dra''
 
|''dra''
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
+
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''deoC''
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  

Revision as of 03:43, 26 September 2011

  • Description: deoxyribose-phosphate aldolase

Gene name dra
Synonyms deoC
Essential no
Product deoxyribose-phosphate aldolase
Function utilization of nucleotides as carbon source
Metabolic function and regulation of this protein in SubtiPathways:
Nucleoside catabolism, Nucleotides (regulation)
MW, pI 22 kDa, 4.926
Gene length, protein length 633 bp, 211 aa
Immediate neighbours nupC, deoR
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
Dra context.gif
This image was kindly provided by SubtiList







Categories containing this gene/protein

utilization of nucleotides

This gene is a member of the following regulons

CcpA regulon, DeoR regulon

The gene

Basic information

  • Locus tag: BSU39420

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde (according to Swiss-Prot)
  • Protein family: DeoC type 1 subfamily (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure: 1MZH (from Aquifex aeolicus, 42% identity, 62% similarity)
  • KEGG entry: [3]

Additional information

Expression and regulation

  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References