Difference between revisions of "Easter egg"

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* '''Description:''' alpha-L-arabinofuranosidase <br/><br/>
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'''Name of the page???'''
  
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{| align="right" border="1" cellpadding="2"
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= [[Sigma factors]] =
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|-
 
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|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
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|''abf2''
 
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|-
 
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|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''xsa ''
 
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|-
 
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no
 
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|-
 
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|style="background:#ABCDEF;" align="center"| '''Product''' || alpha-L-arabinofuranosidase
 
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|-
 
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|style="background:#ABCDEF;" align="center"|'''Function''' || arabinan degradation
 
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|-
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 56 kDa, 5.329 
 
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|-
 
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1485 bp, 495 aa
 
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|-
 
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[trxA]]'', ''[[etfA]]''
 
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|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB14811&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
 
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|-
 
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|-
 
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|-
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:xsa_context.gif]]
 
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<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
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|-
 
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|}
 
  
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__TOC__
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* [[SigB regulon]]
 +
* [[SigD regulon]]
 +
* [[SigE regulon]]
 +
* [[SigF regulon]]
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* [[SigG regulon]]
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* [[SigH regulon]]
 +
* [[SigI regulon]]
 +
* [[SigK regulon]]
 +
* [[SigL regulon]]
 +
* [[SigM regulon]]
 +
* [[SigW regulon]]
 +
* [[SigX regulon]]
 +
* [[SigY regulon]]
 +
* [[Xpf regulon]]
 +
* [[YlaC regulon]]
 +
* [[YvrI-YvrHa regulon]]
  
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<br/><br/><br/><br/>
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= DNA-binding regulators =
  
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=The gene=
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* [[Abh regulon]]
 +
* [[AbrB regulon]]
 +
* [[AcoR regulon]]
 +
* [[AdaA regulon]]
 +
* [[AdhR regulon]]
 +
* [[AhrC regulon]]
 +
* [[AlsR regulon]]
 +
* [[AnsR regulon]]
 +
* [[AraR regulon]]
 +
* [[ArsR regulon]]
 +
* [[AseR regulon]]
 +
* [[AzlB regulon]]
 +
* [[BceR regulon]]
 +
* [[BirA regulon]]
 +
* [[BkdR regulon]]
 +
* [[BltR regulon]]
 +
* [[BmrR regulon]]
 +
* [[BsdA regulon]]
 +
* [[Btr regulon]]
 +
* [[CatR regulon]]
 +
* [[CcpA regulon]]
 +
* [[CcpC regulon]]
 +
* [[CcpN regulon]]
 +
* [[CggR regulon]]
 +
* [[CitR regulon]]
 +
* [[CitT regulon]]
 +
* [[CodY regulon]]
 +
* [[ComA regulon]]
 +
* [[ComK regulon]]
 +
* [[Cso regulon]]
 +
* [[CsoR regulon]]
 +
* [[CssR regulon]]
 +
* [[CtsR regulon]]
 +
* [[CymR regulon]]
 +
* [[CysL regulon]]
 +
* [[CzrA regulon]]
 +
* [[DegU regulon]]
 +
* [[DeoR regulon]]
 +
* [[DesR regulon]]
 +
* [[DnaA regulon]]
 +
* [[ExuR regulon]]
 +
* [[FadR regulon]]
 +
* [[FapR regulon]]
 +
* [[FatR regulon]]
 +
* [[Fnr regulon]]
 +
* [[FruR regulon]]
 +
* [[Fur regulon]]
 +
* [[GabR regulon]]
 +
* [[GerE regulon]]
 +
* [[GerR regulon]]
 +
* [[GlnL regulon]]
 +
* [[GlnR regulon]]
 +
* [[GltC regulon]]
 +
* [[GltR regulon]]
 +
* [[GlvR regulon]]
 +
* [[GmuR regulon]]
 +
* [[GntR regulon]]
 +
* [[GutR regulon]]
 +
* [[HrcA regulon]]
 +
* [[HxlR regulon]]
 +
* [[ImmR regulon]]
 +
* [[IolR regulon]]
 +
* [[KdgR regulon]]
 +
* [[KipR regulon]]
 +
* [[LacR regulon]]
 +
* [[LevR regulon]]
 +
* [[LexA regulon]]
 +
* [[LiaR regulon]]
 +
* [[LicR regulon]]
 +
* [[LmrA regulon]]
 +
* [[LutR regulon]]
 +
* [[LytR regulon]]
 +
* [[MalR regulon]]
 +
* [[ManR regulon]]
 +
* [[MdtR regulon]]
 +
* [[MhqR regulon]]
 +
* [[MntR regulon]]
 +
* [[Mta regulon]]
 +
* [[MsmR regulon]]
 +
* [[MtlR regulon]]
 +
* [[NadR regulon]]
 +
* [[NatR regulon]]
 +
* [[NsrR regulon]]
 +
* [[NtdR regulon]]
 +
* [[OhrR regulon]]
 +
* [[PadR regulon]]
 +
* [[PerR regulon]]
 +
* [[PhoP regulon]]
 +
* [[PucR regulon]]
 +
* [[PurR regulon]]
 +
* [[ResD regulon]]
 +
* [[Rex regulon]]
 +
* [[RghR regulon]]
 +
* [[RocR regulon]]
 +
* [[Rok regulon]]
 +
* [[RsfA regulon]]
 +
* [[SalA regulon]]
 +
* [[ScoC regulon]]
 +
* [[SdpR regulon]]
 +
* [[SenS regulon]]
 +
* [[SinR regulon]]
 +
* [[SlrR regulon]]
 +
* [[Spo0A regulon]]
 +
* [[SpoIIID regulon]]
 +
* [[Spx regulon]]
 +
* [[TnrA regulon]]
 +
* [[TreR regulon]]
 +
* [[WalR regulon]]
 +
* [[Xre regulon]]
 +
* [[XylR regulon]]
 +
* [[YcbG regulon]]
 +
* [[YclJ regulon]]
 +
* [[YcnK regulon]]
 +
* [[YdfI regulon]]
 +
* [[YesS regulon]]
 +
* [[YetL regulon]]
 +
* [[YfhP regulon]]
 +
* [[YfmP regulon]]
 +
* [[YkrP regulon]]
 +
* [[YodB regulon]]
 +
* [[YofA regulon]]
 +
* [[YrkP regulon]]
 +
* [[YtlI regulon]]
 +
* [[YtrA regulon]]
 +
* [[YvoA regulon]]
 +
* [[YvrHb regulon]]
 +
* [[YwcC regulon]]
 +
* [[YxaF regulon]]
 +
* [[YxdJ regulon]]
 +
* [[Zur regulon]]
  
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=== Basic information ===
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= RNA switches =
  
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* '''Locus tag:''' BSU28510
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* [[A-box riboswitch]]
 +
* [[EAR riboswitch]]
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* [[FMN-box riboswitch]]
 +
* [[G-box riboswitch]]
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* [[GlcT riboswitch]]
 +
* [[glmS ribozyme]]
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* [[GlpP riboswitch]]
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* [[HutP riboswitch]]
 +
* [[L-box riboswitch]]
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* [[LicT riboswitch]]
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* [[M-box riboswitch]]
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* [[preQ1 riboswitch]]
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* [[PyrR riboswitch]]
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* [[RNA switch riboswitch]]
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* [[RplT riboswitch]]
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* [[SacT riboswitch]]
 +
* [[SacY riboswitch]]
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* [[S-box riboswitch]]
 +
* [[T-box riboswitch]]
 +
* [[Thi-box riboswitch]]
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* [[TRAP riboswitch]]
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* [[YdaO riboswitch]]
  
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===Phenotypes of a mutant ===
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= Additional regulatory mechanisms =
  
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=== Database entries ===
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* [[CitB regulon]]
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* [[ComN regulon]]
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* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/xsa.html]
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* [[CsrA regulon]]
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* [[FsrA regulon]]
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* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11985]
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* [[MifM regulon]]
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* [[ratA regulon]]
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=== Additional information===
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* [[SR1 regulon]]
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* [[Stringent response]]
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= Categories containing this gene/protein =
 
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{{SubtiWiki category|[[utilization of specific carbon sources]]}}
 
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=The protein=
 
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=== Basic information/ Evolution ===
 
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* '''Catalyzed reaction/ biological activity:''' Hydrolysis of terminal non-reducing alpha-L-arabinofuranoside residues in alpha-L-arabinosides (according to Swiss-Prot)
 
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* '''Protein family:''' glycosyl hydrolase 51 family (according to Swiss-Prot)
 
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* '''Paralogous protein(s):'''
 
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=== Extended information on the protein ===
 
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* '''Kinetic information:'''
 
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* '''Domains:'''
 
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* '''Modification:'''
 
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* '''Cofactor(s):'''
 
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* '''Effectors of protein activity:'''
 
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* '''Interactions:'''
 
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* '''Localization:'''
 
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=== Database entries ===
 
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* '''Structure:'''
 
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* '''UniProt:''' [http://www.uniprot.org/uniprot/P94552 P94552]
 
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* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU28510]
 
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* '''E.C. number:''' [http://www.expasy.org/enzyme/3.2.1.55 3.2.1.55]
 
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=== Additional information===
 
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=Expression and regulation=
 
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* '''Operon:''' ''abf2'' [http://www.ncbi.nlm.nih.gov/sites/entrez/14973026 PubMed]
 
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* '''[[Sigma factor]]:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/14973026 PubMed]
 
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* '''Regulation:'''
 
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** induced by arabinose ([[AraR]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/14973026 PubMed]
 
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* '''Regulatory mechanism:'''
 
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** [[AraR]]:  transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/14973026 PubMed]
 
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−
* '''Additional information:'''
 
−
 
 
−
=Biological materials =
 
−
 
 
−
* '''Mutant:'''
 
−
 
 
−
* '''Expression vector:'''
 
−
       
 
−
* '''lacZ fusion:'''
 
−
 
 
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* '''GFP fusion:'''
 
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−
* '''two-hybrid system:'''
 
−
 
 
−
* '''Antibody:'''
 
−
 
 
−
=Labs working on this gene/protein=
 
−
 
 
−
=Your additional remarks=
 
−
 
 
−
=References=
 
−
 
 
−
<pubmed>14973026,18757805,,14973026, </pubmed>
 
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[[Category:Protein-coding genes]]
 

Revision as of 14:07, 7 December 2010

Name of the page???

Sigma factors

DNA-binding regulators

RNA switches

Additional regulatory mechanisms

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