Difference between revisions of "YwdA"
| Line 89: | Line 89: | ||
=Expression and regulation= | =Expression and regulation= | ||
| + | * '''Operon:''' ''[[sacP]]-[[sacA]]-[[ywdA]]'' {{PubMed|3100393}} | ||
| − | + | * '''[[Sigma factor]]:''' [[SigA]] {{PubMed|8702561}} | |
| − | |||
| − | * '''[[Sigma factor]]:''' [[ | ||
* '''Regulation:''' | * '''Regulation:''' | ||
| + | ** induced by sucrose ([[SacT]]) {{PubMed|2163394}} | ||
| + | ** repressed by glucose ([[CcpA]]) | ||
| − | * '''Regulatory mechanism:''' | + | * '''Regulatory mechanism:''' |
| + | ** [[SacT]]: binding to a [[RNA switch]] results in transcription antitermination {{PubMed|2163394,8702561}} | ||
| + | ** [[CcpA]]: transcription repression | ||
* '''Additional information:''' | * '''Additional information:''' | ||
| Line 119: | Line 122: | ||
=References= | =References= | ||
| − | + | <pubmed>3100393 8702561 2163394 8702561 </pubmed> | |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 20:10, 4 February 2010
- Description: unknown
| Gene name | ywdA |
| Synonyms | ipa-51d |
| Essential | no |
| Product | unknown |
| Function | unknown |
| Metabolic function and regulation of this protein in SubtiPathways: Sugar catabolism | |
| MW, pI | 9 kDa, 7.085 |
| Gene length, protein length | 246 bp, 82 aa |
| Immediate neighbours | pdxK, sacA |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
The gene
Basic information
- Locus tag: BSU38030
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- Structure:
- UniProt: P39609
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulatory mechanism:
- SacT: binding to a RNA switch results in transcription antitermination PubMed
- CcpA: transcription repression
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
M Arnaud, M Débarbouillé, G Rapoport, M H Saier, J Reizer
In vitro reconstitution of transcriptional antitermination by the SacT and SacY proteins of Bacillus subtilis.
J Biol Chem: 1996, 271(31);18966-72
[PubMed:8702561]
[WorldCat.org]
[DOI]
(P p)
M Debarbouille, M Arnaud, A Fouet, A Klier, G Rapoport
The sacT gene regulating the sacPA operon in Bacillus subtilis shares strong homology with transcriptional antiterminators.
J Bacteriol: 1990, 172(7);3966-73
[PubMed:2163394]
[WorldCat.org]
[DOI]
(P p)
A Fouet, A Klier, G Rapoport
Nucleotide sequence of the sucrase gene of Bacillus subtilis.
Gene: 1986, 45(2);221-5
[PubMed:3100393]
[WorldCat.org]
[DOI]
(P p)
