Difference between revisions of "GlyS"

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(Expression and regulation)
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=Expression and regulation=
 
=Expression and regulation=
  
* '''Operon:'''  
+
* '''Operon:''' ''[[glyQ]]-[[glyS]]'' (according to [http://dbtbs.hgc.jp/COG/prom/glyQS.html DBTBS])
  
 
* '''[[Sigma factor]]:'''  
 
* '''[[Sigma factor]]:'''  
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
 +
** induced by glycine limitation ([[T-box]]) {{PubMed|19258532}}
  
 
* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
 +
** [[T-box]]: [[RNA switch]], transcriptional antitermination {{PubMed|19258532}} 
  
* '''Additional information:'''  
+
* '''Additional information:'''
  
 
=Biological materials =
 
=Biological materials =

Revision as of 19:55, 1 October 2009

  • Description: glycyl-tRNA synthetase (beta subunit)

Gene name glyS
Synonyms yqfK
Essential yes PubMed
Product glycyl-tRNA synthetase (beta subunit)
Function translation
Metabolic function and regulation of this protein in SubtiPathways:
tRNA charging
MW, pI 76 kDa, 4.973
Gene length, protein length 2037 bp, 679 aa
Immediate neighbours ccpN, glyQ
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
GlyS context.gif
This image was kindly provided by SubtiList







The gene

Basic information

  • Locus tag: BSU25260

Phenotypes of a mutant

essential PubMed

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly) (according to Swiss-Prot)
  • Protein family: class-II aminoacyl-tRNA synthetase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [3]

Additional information

Expression and regulation

  • Regulation:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References