Difference between revisions of "YfkJ"
| Line 88: | Line 88: | ||
=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' | + | * '''Operon:''' ''[[yfkJ]]-[[yfkI]]-[[yfkH]]'' (according to [http://dbtbs.hgc.jp/COG/prom/yfkJIH.html DBTBS]) |
| − | * '''[[Sigma factor]]:''' [[SigB]] | + | * '''[[Sigma factor]]:''' SigA {{PubMed|11532142}}, [[SigB]] {{PubMed|15805528,11532142}} |
| − | * '''Regulation:''' induced by stress ([[SigB]]) | + | * '''Regulation:''' induced by stress ([[SigB]]) {{PubMed|15805528,11532142}} |
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| Line 118: | Line 118: | ||
=References= | =References= | ||
| − | <pubmed>15866923,15995210,,15805528, </pubmed> | + | <pubmed>15866923,15995210,,15805528,11532142 </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 18:34, 31 August 2009
- Description: general stress protein, protein tyrosine phosphatase
| Gene name | yfkJ |
| Synonyms | |
| Essential | no |
| Product | protein tyrosine phosphatase |
| Function | survival of ethanol stress |
| MW, pI | 17 kDa, 4.563 |
| Gene length, protein length | 468 bp, 156 aa |
| Immediate neighbours | yfkK, yfkI |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
The gene
Basic information
- Locus tag: BSU07880
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: Protein tyrosine phosphate + H2O = protein tyrosine + phosphate (according to Swiss-Prot)
- Protein family: low molecular weight phosphotyrosine protein phosphatase family (according to Swiss-Prot)
- Paralogous protein(s): YwlE
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- Structure:
- UniProt: O35016
- KEGG entry: [3]
- E.C. number: 3.1.3.48
Additional information
Expression and regulation
- Sigma factor: SigA PubMed, SigB PubMed
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Lucia Musumeci, Cristina Bongiorni, Lutz Tautz, Robert A Edwards, Andrei Osterman, Marta Perego, Tomas Mustelin, Nunzio Bottini
Low-molecular-weight protein tyrosine phosphatases of Bacillus subtilis.
J Bacteriol: 2005, 187(14);4945-56
[PubMed:15995210]
[WorldCat.org]
[DOI]
(P p)
Ivan Mijakovic, Lucia Musumeci, Lutz Tautz, Dina Petranovic, Robert A Edwards, Peter Ruhdal Jensen, Tomas Mustelin, Josef Deutscher, Nunzio Bottini
In vitro characterization of the Bacillus subtilis protein tyrosine phosphatase YwqE.
J Bacteriol: 2005, 187(10);3384-90
[PubMed:15866923]
[WorldCat.org]
[DOI]
(P p)
Dirk Höper, Uwe Völker, Michael Hecker
Comprehensive characterization of the contribution of individual SigB-dependent general stress genes to stress resistance of Bacillus subtilis.
J Bacteriol: 2005, 187(8);2810-26
[PubMed:15805528]
[WorldCat.org]
[DOI]
(P p)
C W Price, P Fawcett, H Cérémonie, N Su, C K Murphy, P Youngman
Genome-wide analysis of the general stress response in Bacillus subtilis.
Mol Microbiol: 2001, 41(4);757-74
[PubMed:11532142]
[WorldCat.org]
[DOI]
(P p)
