Difference between revisions of "YdhU/1"
| Line 39: | Line 39: | ||
===Phenotypes of a mutant === | ===Phenotypes of a mutant === | ||
| + | thsi is a pseudogene in ''B. subtilis'' 168 | ||
=== Database entries === | === Database entries === | ||
| Line 88: | Line 89: | ||
=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' | + | * '''Operon:''' ''ydhU'' {{PubMed|12354229}} |
* '''[[Sigma factor]]:''' | * '''[[Sigma factor]]:''' | ||
| − | * '''Regulation:''' | + | * '''Regulation:''' induced by iron starvation ([[Fur]]) {{PubMed|12354229}} |
| − | * '''Regulatory mechanism:''' | + | * '''Regulatory mechanism:''' Fur: transcription repression {{PubMed|12354229}} |
* '''Additional information:''' | * '''Additional information:''' | ||
| Line 117: | Line 118: | ||
=References= | =References= | ||
| − | + | <pubmed>12354229 </pubmed> | |
[[Category:Pseudogenes]] | [[Category:Pseudogenes]] | ||
Revision as of 18:51, 23 August 2009
- Description: similar to Mn catalase
| Gene name | ydhU/1 |
| Synonyms | ydhU |
| Essential | no |
| Product | unknown |
| Function | unknown |
| MW, pI | 16 kDa, 5.165 |
| Gene length, protein length | 453 bp, 151 aa |
| Immediate neighbours | gmuG, trnE-Arg |
| Gene sequence (+200bp) | Protein sequence |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
The gene
Basic information
- Locus tag:
Phenotypes of a mutant
thsi is a pseudogene in B. subtilis 168
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: manganese catalase family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- Structure:
- Swiss prot entry: O05513
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon: ydhU PubMed
- Regulatory mechanism: Fur: transcription repression PubMed
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Noel Baichoo, Tao Wang, Rick Ye, John D Helmann
Global analysis of the Bacillus subtilis Fur regulon and the iron starvation stimulon.
Mol Microbiol: 2002, 45(6);1613-29
[PubMed:12354229]
[WorldCat.org]
[DOI]
(P p)
