Difference between revisions of "YvrI"
(→Labs working on this gene/protein) |
|||
| Line 1: | Line 1: | ||
| − | * '''Description:''' | + | * '''Description:''' sigma factor YvrI <br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
| Line 70: | Line 70: | ||
* '''Effectors of protein activity:''' | * '''Effectors of protein activity:''' | ||
| − | * '''Interactions:''' | + | * '''Interactions:''' [[YvrI]]-[[YvrH⎮YvrHa]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19047353 PubMed] |
* '''Localization:''' | * '''Localization:''' | ||
| Line 88: | Line 88: | ||
=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' | + | * '''Operon:''' ''[[yvrI]]-[[yvrH⎮ yvrHa]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/19047353 PubMed] |
| − | * '''Sigma factor:''' | + | * '''Sigma factor:''' [[YvrI]]-[[YvrH⎮YvrHa]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19047353 PubMed] |
| − | * '''Regulation:''' | + | * '''Regulation:''' induced by acidic growth conditions [http://www.ncbi.nlm.nih.gov/sites/entrez/19047353 PubMed] |
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| − | * '''Additional information:''' | + | * '''Additional information:''' |
=Biological materials = | =Biological materials = | ||
| Line 119: | Line 119: | ||
=References= | =References= | ||
| + | # MacLellan et al. (2009) The YvrI alternative sigma factor is essential for acid stress induction of oxalate decarboxylase in ''Bacillus subtilis''. ''J. Bacteriol.'' '''191:''' 931-939. [http://www.ncbi.nlm.nih.gov/sites/entrez/19047353 PubMed] | ||
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed] | # Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed] | ||
Revision as of 20:15, 5 February 2009
- Description: sigma factor YvrI
| Gene name | yvrI |
| Synonyms | |
| Essential | |
| Product | |
| Function | unknown |
| MW, pI | 22 kDa, 9.779 |
| Gene length, protein length | 573 bp, 191 aa |
| Immediate neighbours | |
| Gene sequence (+200bp) | Protein sequence |
Genetic context 
| |
Contents
The gene
Basic information
- Coordinates:
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions: YvrI-YvrH⎮YvrHa PubMed
- Localization:
Database entries
- Structure:
- Swiss prot entry:
- KEGG entry:
- E.C. number:
Additional information
Expression and regulation
- Operon: yvrI-yvrH⎮ yvrHa PubMed
- Sigma factor: YvrI-YvrH⎮YvrHa PubMed
- Regulation: induced by acidic growth conditions PubMed
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
John Helmann, Cornell University, USA Homepage
