Difference between revisions of "Rny"
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=== Additional information=== | === Additional information=== | ||
| − | + | required for processing of gapA operon mRNA | |
=Expression and regulation= | =Expression and regulation= | ||
Revision as of 12:22, 7 January 2009
- Description: Rny catalyzes the hydrolysis of both 2',3'-cyclic AMP and 2',3'-cyclic GMP into 3'-AMP and 3'-GMP and putative RNase
| Gene name | rny |
| Synonyms | ymdA |
| Essential | yes |
| Product | 2',3'-cyclic-nucleotide 2'-phosphodiesterase |
| Function | hydrolysis of AMP and GMP& putative RNase |
| MW, pI | 58,7 kDa, 5.39 |
| Gene length, protein length | 1560 bp, 520 amino acids |
| Immediate neighbours | pdbX, ymdB |
| Gene sequence (+200bp) | Protein sequence |
| Genetic context File:GenE context.gif | |
Contents
The gene
Basic information
- Coordinates:
Phenotypes of a mutant
Database entries
- DBTBS entry:
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: Nucleoside 2',3'-cyclic phosphate + H(2)O = nucleoside 3'-phosphate
- Protein family: 2',3' cyclic nucleotide phosphodiesterase family
- Paralogous protein(s): similar to unknown proteins
Extended information on the protein
- Kinetic information:
- Domains:
- transmembrane domain (4–24)
- KH domain (210–273)
- HD domain (336–429)
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization: Single-pass membrane protein
Database entries
- Structure:
- Swiss prot entry: [2]
- KEGG entry: [3]
- E.C. number: [4]
Additional information
required for processing of gapA operon mRNA
Expression and regulation
- Operon:
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
Labs working on this gene/protein
Your additional remarks
References
- Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed
