Difference between revisions of "RatA"

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(New page: * '''Description:''' write here <br/><br/> {| align="right" border="1" cellpadding="2" |- |style="background:#ABCDEF;" align="center"|'''Gene name''' |''genE'' |- |style="background:#ABC...)
 
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* '''Description:''' write here <br/><br/>
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* '''Description:''' antisense RNA<br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
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|''genE''
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|''ratA''
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 
|-
 
|-
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|style="background:#ABCDEF;" align="center"| '''Essential''' || write here
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no
 
|-
 
|-
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|style="background:#ABCDEF;" align="center"| '''Product''' || write here
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|style="background:#ABCDEF;" align="center"| '''Product''' || RNA antitoxin A
 
|-
 
|-
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|style="background:#ABCDEF;" align="center"|'''Function''' || write here
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|style="background:#ABCDEF;" align="center"|'''Function''' || antisense RNA for ''[[txpA]]''
 
|-
 
|-
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || xx,x kDa, y.yy
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|style="background:#ABCDEF;" align="center"| '''Gene length''' || 222 bp
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|-
 
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || aaa bp, bbb amino acids
 
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[genA]]'', ''[[genB]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[genA]]'', ''[[genB]]''
 
|-
 
|-
 
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/genE_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
 
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/genE_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
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|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/genE_protein.txt Protein sequence]'''
 
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:genE_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:genE_context.gif]]
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* '''SubtiList entry:'''
 
* '''SubtiList entry:'''
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=== Additional information===
 
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=The protein=
 
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=== Basic information/ Evolution ===
 
−
 
−
* '''Catalyzed reaction/ biological activity:'''
 
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* '''Protein family:'''
 
−
 
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* '''Paralogous protein(s):'''
 
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=== Extended information on the protein ===
 
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* '''Kinetic information:'''
 
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* '''Domains:'''
 
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* '''Modification:'''
 
−
 
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* '''Cofactor(s):'''
 
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* '''Effectors of protein activity:'''
 
−
 
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* '''Interactions:'''
 
−
 
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* '''Localization:'''
 
−
 
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=== Database entries ===
 
  
 
* '''Structure:'''
 
* '''Structure:'''
  
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* '''Swiss prot entry:'''
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=== Additional information===
  
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* '''KEGG entry:'''
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=The RNA=
  
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* '''E.C. number:'''
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binds  the ''[[txpA]]'' mRNA and triggers its degradation [http://www.ncbi.nlm.nih.gov/sites/entrez/16166525 PubMed]
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=== Additional information===
 
  
 
=Expression and regulation=
 
=Expression and regulation=
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=Labs working on this gene/protein=
 
=Labs working on this gene/protein=
 +
 +
[[Richard Losick]], Harvard University, Cambridge, USA
  
 
=Your additional remarks=
 
=Your additional remarks=
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=References=
 
=References=
  
 +
# Silvaggi JM, Perkins JB, Losick R (2005) Small untranslated RNA antitoxin in ''Bacillus subtilis''.''J. Bacteriol.'' '''187:''' 6641-6650. [http://www.ncbi.nlm.nih.gov/sites/entrez/16166525 PubMed]
 
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]
 
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]

Revision as of 13:28, 20 February 2009

  • Description: antisense RNA

Gene name ratA
Synonyms
Essential no
Product RNA antitoxin A
Function antisense RNA for txpA
Gene length 222 bp
Immediate neighbours genA, genB
Gene sequence (+200bp)
Genetic context
File:GenE context.gif



The gene

Basic information

  • Coordinates (CDS):

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry:
  • Structure:

Additional information

The RNA

binds the txpA mRNA and triggers its degradation PubMed

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Richard Losick, Harvard University, Cambridge, USA

Your additional remarks

References

  1. Silvaggi JM, Perkins JB, Losick R (2005) Small untranslated RNA antitoxin in Bacillus subtilis.J. Bacteriol. 187: 6641-6650. PubMed
  2. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed
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