Difference between revisions of "Sandbox"

From SubtiWiki
Jump to: navigation, search
Line 1: Line 1:
−
{| align="right" border="1" cellpadding="2"
+
* '''Description:''' write here <br/><br/>
−
|+'''Summary of key facts'''
+
 
−
|width="225" |'''Gene name'''
+
{| align="right" border="1" cellpadding="2"  
−
|width="225" |''gltC''
+
|-
 +
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 +
|''ccpC''
 +
|-
 +
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ykuM ''
 
|-
 
|-
−
|'''Product''' || ''gltC''
+
|style="background:#ABCDEF;" align="center"| '''Essential''' || write here
 
|-
 
|-
−
|'''Function''' || ''gltC''
+
|style="background:#ABCDEF;" align="center"| '''Product''' || transcriptional regulator (LysR family)
 
|-
 
|-
−
|'''Immediate neighbours''' || ''[[gltC]]''
+
|style="background:#ABCDEF;" align="center"|'''Function''' || carbon catabolite and anaerobic repression of citB and citZ
 
|-
 
|-
−
|colspan="2" | [[Image:gltC_context.gif]]
+
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 33 kDa, 5.932 
 
|-
 
|-
−
|[http://subtiwiki.uni-goettingen.de/gltC_nucleotide.txt Gene sequence (+200bp)] || [http://subtiwiki.uni-goettingen.de/gltC_protein.txt Protein sequence]
+
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 879 bp, 293 aa
 +
|-
 +
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[genA]]'', ''[[genB]]''
 +
|-
 +
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/ccpC_nucleotide.txt     Gene sequence     (+200bp)   ]'''
 +
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/ccpC_protein.txt Protein sequence]'''
 +
|-
 +
|colspan="2" | '''Genetic context''' <br/> [[Image:ccpC_context.gif]]
 
|-
 
|-
−
|'''Essential''' || No
 
 
|}
 
|}
  
 +
__TOC__
 +
 +
<br/><br/>
 +
 +
=The gene=
 +
 +
=== Basic information ===
 +
 +
* '''Coordinates:'''
 +
 +
===Phenotypes of a mutant ===
 +
 +
=== Database entries ===
 +
 +
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ccpC.html]
 +
 +
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG13297]
 +
 +
=== Additional information===
 +
 +
 +
=The protein=
 +
 +
=== Basic information/ Evolution ===
 +
 +
* '''Catalyzed reaction/ biological activity:'''
 +
 +
* '''Protein family:'''
 +
 +
* '''Paralogous protein(s):'''
 +
 +
=== Extended information on the protein ===
 +
 +
* '''Kinetic information:'''
 +
 +
* '''Domains:'''
  
 +
* '''Modification:'''
  
−
{| border="1"
+
* '''Cofactor(s):'''
−
! width="100px" | Name !! width ="300px"| Description !! width="150px" |Publication !! width="150px" | Source
+
 
−
|-
+
* '''Effectors of protein activity:'''
−
| h
+
 
−
| o
+
* '''Interactions:'''
−
| l
+
 
−
| a
+
* '''Localization:'''
−
|-
+
 
−
| c
+
=== Database entries ===
−
| o
+
 
−
| m
+
* '''Structure:'''
−
| o
+
 
−
|}
+
* '''Swiss prot entry:'''
 +
 
 +
* '''KEGG entry:'''
 +
 
 +
* '''E.C. number:'''
 +
 
 +
=== Additional information===
 +
 
 +
=Expression and regulation=
 +
 
 +
* '''Operon:'''
 +
 
 +
* '''Sigma factor:'''
 +
 
 +
* '''Regulation:'''
 +
 
 +
* '''Regulatory mechanism:'''
 +
 
 +
* '''Additional information:'''
 +
 
 +
=Biological materials =
 +
 
 +
* '''Mutant:'''
 +
 
 +
* '''Expression vector:'''
 +
 +
* '''lacZ fusion:'''
 +
 
 +
* '''GFP fusion:'''
 +
 
 +
* '''two-hybrid system:'''
 +
 
 +
* '''Antibody:'''
 +
 
 +
=Labs working on this gene/protein=
 +
 
 +
=Your additional remarks=
  
 +
=References=
  
−
{|
+
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]
−
|-
 
−
|  hola || como 
 
−
|-
 
−
|  estas || hoy 
 
−
|-
 
−
<!-- Please copy the two rows bellow -->
 
−
|  || 
 
−
|-
 
−
|}
 

Revision as of 17:06, 29 January 2009

  • Description: write here

Gene name ccpC
Synonyms ykuM
Essential write here
Product transcriptional regulator (LysR family)
Function carbon catabolite and anaerobic repression of citB and citZ
MW, pI 33 kDa, 5.932
Gene length, protein length 879 bp, 293 aa
Immediate neighbours genA, genB
Gene sequence (+200bp) Protein sequence
Genetic context
CcpC context.gif



The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • Swiss prot entry:
  • KEGG entry:
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed
Retrieved from "http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=Sandbox&oldid=2025"