Difference between revisions of "RecF"
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{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
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|style="background:#ABCDEF;" align="center"|'''Gene name''' | |style="background:#ABCDEF;" align="center"|'''Gene name''' | ||
|''recF'' | |''recF'' | ||
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|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' '' | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' '' | ||
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|style="background:#ABCDEF;" align="center"| '''Essential''' || | |style="background:#ABCDEF;" align="center"| '''Essential''' || | ||
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|style="background:#ABCDEF;" align="center"| '''Product''' || | |style="background:#ABCDEF;" align="center"| '''Product''' || | ||
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|style="background:#ABCDEF;" align="center"|'''Function''' || DNA repair and genetic recombination | |style="background:#ABCDEF;" align="center"|'''Function''' || DNA repair and genetic recombination | ||
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 42 kDa, 7.015 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 42 kDa, 7.015 | ||
| − | |- | + | |- |
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1110 bp, 370 aa | |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1110 bp, 370 aa | ||
| − | |- | + | |- |
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yaaA]]'', ''[[yaaB]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yaaA]]'', ''[[yaaB]]'' | ||
| − | |- | + | |- |
| − | + | |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/recF_nucleotide.txt Gene sequence (+200bp) ]''' | |
| − | |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni- | + | |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/recF_protein.txt Protein sequence]''' |
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| − | |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni- | + | |colspan="2" | '''Genetic context''' <br/> [[Image:recF_context.gif]] |
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| − | |colspan="2" | '''Genetic context''' <br/> [[Image: | ||
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|} | |} | ||
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=== Database entries === | === Database entries === | ||
| − | * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yaaA- | + | * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yaaA-recF-yaaB-gyrB.html] |
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* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10068] | * '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10068] | ||
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* '''Swiss prot entry:''' | * '''Swiss prot entry:''' | ||
| − | * '''KEGG entry:''' [http://www.genome.jp/dbget- | + | * '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU00040] |
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* '''E.C. number:''' | * '''E.C. number:''' | ||
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=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' ''[[yaaA]]- | + | * '''Operon:''' ''[[yaaA]]-[[recF]]-[[yaaB]]-[[gyrB]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/2987848 PubMed] |
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* '''Sigma factor:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/2987848 PubMed] | * '''Sigma factor:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/2987848 PubMed] | ||
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* '''GFP fusion:''' | * '''GFP fusion:''' | ||
| − | * '''two- | + | * '''two-hybrid system:''' |
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* '''Antibody:''' | * '''Antibody:''' | ||
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=References= | =References= | ||
| − | # Ogasawara et al. (1985) Structure and function of the region of the replication origin of the ''Bacillus subtilis'' chromosome. IV. Transcription of the oriC region and expression of DNA gyrase genes and other open reading frames.''Nucl. Acids Res.'' '''11:''' 2267- | + | # Ogasawara et al. (1985) Structure and function of the region of the replication origin of the ''Bacillus subtilis'' chromosome. IV. Transcription of the oriC region and expression of DNA gyrase genes and other open reading frames.''Nucl. Acids Res.'' '''11:''' 2267-2279. [http://www.ncbi.nlm.nih.gov/sites/entrez/2987848 PubMed] |
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Revision as of 08:56, 23 March 2009
- Description: recombination protein
| Gene name | recF |
| Synonyms | |
| Essential | |
| Product | |
| Function | DNA repair and genetic recombination |
| MW, pI | 42 kDa, 7.015 |
| Gene length, protein length | 1110 bp, 370 aa |
| Immediate neighbours | yaaA, yaaB |
| Gene sequence (+200bp) | Protein sequence |
Genetic context 
| |
Contents
The gene
Basic information
- Coordinates:
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- Structure:
- Swiss prot entry:
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
- Ogasawara et al. (1985) Structure and function of the region of the replication origin of the Bacillus subtilis chromosome. IV. Transcription of the oriC region and expression of DNA gyrase genes and other open reading frames.Nucl. Acids Res. 11: 2267-2279. PubMed
