Difference between revisions of "RecF"

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{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
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<div align="right"> <small>the origin of the image is [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|''recF''
 
|''recF''
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<div align="right"> <small>the origin of the image is [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
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<div align="right"> <small>the origin of the image is [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
 
|style="background:#ABCDEF;" align="center"| '''Essential''' ||  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' ||  
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<div align="right"> <small>the origin of the image is [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
 
|style="background:#ABCDEF;" align="center"| '''Product''' ||  
 
|style="background:#ABCDEF;" align="center"| '''Product''' ||  
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<div align="right"> <small>the origin of the image is [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
 
|style="background:#ABCDEF;" align="center"|'''Function''' || DNA repair and genetic recombination
 
|style="background:#ABCDEF;" align="center"|'''Function''' || DNA repair and genetic recombination
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<div align="right"> <small>the origin of the image is [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 42 kDa, 7.015   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 42 kDa, 7.015   
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<div align="right"> <small>the origin of the image is [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
 
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1110 bp, 370 aa  
 
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1110 bp, 370 aa  
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<div align="right"> <small>the origin of the image is [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yaaA]]'', ''[[yaaB]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yaaA]]'', ''[[yaaB]]''
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|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/recF_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
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<div align="right"> <small>the origin of the image is [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
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|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/recF_protein.txt Protein sequence]'''
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|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-  
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|-
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<div align="right"> <small>the origin of the image is [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>goettingen.de/recF_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
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|colspan="2" | '''Genetic context''' <br/> [[Image:recF_context.gif]]
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|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-  
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|-
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<div align="right"> <small>the origin of the image is [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>goettingen.de/recF_protein.txt Protein sequence]'''
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|-  
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<div align="right"> <small>the origin of the image is [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
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|colspan="2" | '''Genetic context''' <br/> [[Image:recF_-
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<div align="right"> <small>the origin of the image is [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>|-  
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<div align="right"> <small>the origin of the image is [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
 
|}
 
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=== Database entries ===
 
=== Database entries ===
  
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* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yaaA-recF-yaaB-gyrB.html]
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* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yaaA-  
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<div align="right"> <small>the origin of the image is [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>recF-  
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<div align="right"> <small>the origin of the image is [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>yaaB-  
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<div align="right"> <small>the origin of the image is [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>gyrB.html]
  
 
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10068]
 
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10068]
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* '''Swiss prot entry:'''
 
* '''Swiss prot entry:'''
  
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* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU00040]
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* '''KEGG entry:''' [http://www.genome.jp/dbget-  
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<div align="right"> <small>the origin of the image is [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>bin/www_bget?bsu+BSU00040]
  
 
* '''E.C. number:'''
 
* '''E.C. number:'''
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=Expression and regulation=
 
=Expression and regulation=
  
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* '''Operon:''' ''[[yaaA]]-[[recF]]-[[yaaB]]-[[gyrB]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/2987848 PubMed]
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* '''Operon:''' ''[[yaaA]]-  
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<div align="right"> <small>the origin of the image is [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>[[recF]]-  
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<div align="right"> <small>the origin of the image is [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>[[yaaB]]-  
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<div align="right"> <small>the origin of the image is [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>[[gyrB]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/2987848 PubMed]
  
 
* '''Sigma factor:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/2987848 PubMed]
 
* '''Sigma factor:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/2987848 PubMed]
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* '''GFP fusion:'''
 
* '''GFP fusion:'''
  
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* '''two-hybrid system:'''  
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* '''two-  
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<div align="right"> <small>the origin of the image is [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>hybrid system:'''  
  
 
* '''Antibody:'''
 
* '''Antibody:'''
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=References=
 
=References=
  
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# Ogasawara et al. (1985) Structure and function of the region of the replication origin of the ''Bacillus subtilis'' chromosome. IV. Transcription of the oriC region and expression of DNA gyrase genes and other open reading frames.''Nucl. Acids Res.'' '''11:''' 2267-2279. [http://www.ncbi.nlm.nih.gov/sites/entrez/2987848 PubMed]
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# Ogasawara et al. (1985) Structure and function of the region of the replication origin of the ''Bacillus subtilis'' chromosome. IV. Transcription of the oriC region and expression of DNA gyrase genes and other open reading frames.''Nucl. Acids Res.'' '''11:''' 2267-  
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<div align="right"> <small>the origin of the image is [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>2279. [http://www.ncbi.nlm.nih.gov/sites/entrez/2987848 PubMed]

Revision as of 15:01, 20 March 2009

  • Description: recombination protein

the origin of the image is SubtiList
the origin of the image is SubtiList
the origin of the image is SubtiList
the origin of the image is SubtiList
the origin of the image is SubtiList
the origin of the image is SubtiList
the origin of the image is SubtiList
the origin of the image is SubtiList
the origin of the image is SubtiList
the origin of the image is SubtiList
Gene name recF
Synonyms
Essential
Product
Function DNA repair and genetic recombination
MW, pI 42 kDa, 7.015
Gene length, protein length 1110 bp, 370 aa
Immediate neighbours yaaA, yaaB
[http://subtiwiki.uni-
the origin of the image is SubtiListgoettingen.de/recF_nucleotide.txt Gene sequence (+200bp) ]
[http://subtiwiki.uni-
the origin of the image is SubtiListgoettingen.de/recF_protein.txt Protein sequence]
Genetic context
[[Image:recF_-
the origin of the image is SubtiList|-
the origin of the image is SubtiList



The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

the origin of the image is SubtiListrecF-
the origin of the image is SubtiListyaaB-
the origin of the image is SubtiListgyrB.html]
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • Swiss prot entry:
the origin of the image is SubtiListbin/www_bget?bsu+BSU00040]
  • E.C. number:

Additional information

Expression and regulation

the origin of the image is SubtiListrecF-
the origin of the image is SubtiListyaaB-
the origin of the image is SubtiListgyrB PubMed
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-
the origin of the image is SubtiListhybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Ogasawara et al. (1985) Structure and function of the region of the replication origin of the Bacillus subtilis chromosome. IV. Transcription of the oriC region and expression of DNA gyrase genes and other open reading frames.Nucl. Acids Res. 11: 2267-
the origin of the image is SubtiList2279. PubMed