Difference between revisions of "SprB"
Line 104: | Line 104: | ||
* '''Operon:''' | * '''Operon:''' | ||
+ | ** ''[[yosX]]-[[yosZ]]-[[yotB]]-[[yotC]]-[[yotD]]-[[yotE]]-[[yotF]]-[[yotG]]-[[yotH]]-[[yotI]]-[[yotJ]]-[[yotK]]-[[yotM]]-[[sprB]]'' {{PubMed|25299644}} | ||
+ | ** ''[[sprB]]'' {{PubMed|25299644}} | ||
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yotN_2152086_2152262_-1 sprB] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yotN_2152086_2152262_-1 sprB] {{PubMed|22383849}} | ||
* '''[[Sigma factor]]:''' | * '''[[Sigma factor]]:''' | ||
+ | ** ''[[yosX]]'': SigA {{PubMed|25299644}} | ||
+ | ** ''[[sprB]]'': [[SigE]] and/or [[SigK]] {{PubMed|25299644}} | ||
* '''Regulation:''' | * '''Regulation:''' | ||
− | ** | + | ** ''[[yosX]]'': induced by MMC addition to vegetative cells {{PubMed|25299644}} |
− | ** | + | ** ''[[sprB]]'': expressed during the middle and late stages of [[sporulation]] {{PubMed|25299644}} |
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' |
Revision as of 09:08, 10 October 2014
- Description: excision of prophage SPβ
Gene name | yotN |
Synonyms | |
Essential | no |
Product | unknown |
Function | excision of prophage SPβ |
Gene expression levels in SubtiExpress: sprB | |
MW, pI | 6 kDa, 5.163 |
Gene length, protein length | 174 bp, 58 aa |
Immediate neighbours | yodU, yotM |
Sequences | Protein DNA DNA_with_flanks |
Genetic context This image was kindly provided by SubtiList
| |
Expression at a glance PubMed |
Contents
Categories containing this gene/protein
DNA repair/ recombination, SP-beta prophage, sporulation proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU19820
Phenotypes of a mutant
Database entries
- BsubCyc: BSU19820
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- BsubCyc: BSU19820
- Structure:
- UniProt: O34850
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- yosX: induced by MMC addition to vegetative cells PubMed
- sprB: expressed during the middle and late stages of sporulation PubMed
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Kimihiro Abe, Yuta Kawano, Keito Iwamoto, Kenji Arai, Yuki Maruyama, Patrick Eichenberger, Tsutomu Sato
Developmentally-regulated excision of the SPβ prophage reconstitutes a gene required for spore envelope maturation in Bacillus subtilis.
PLoS Genet: 2014, 10(10);e1004636
[PubMed:25299644]
[WorldCat.org]
[DOI]
(I e)