Difference between revisions of "YwbD"
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* '''Expression vector:''' | * '''Expression vector:''' | ||
− | * '''lacZ fusion:''' ''amyE::p(ywbD-lacZ cat)'', constructed with [[pAC5]], available in [[ Jörg Stülke]]'s lab | + | * '''lacZ fusion:''' GP1614 ''amyE::p(ywbD-lacZ cat)'', constructed with pGP2150 based on [[pAC5]], available in [[ Jörg Stülke]]'s lab |
* '''GFP fusion:''' | * '''GFP fusion:''' |
Revision as of 11:31, 31 January 2014
- Description: unknown
Gene name | ywbD |
Synonyms | ipa-19d |
Essential | no |
Product | unknown |
Function | unknown |
Gene expression levels in SubtiExpress: ywbD | |
MW, pI | 44 kDa, 9.178 |
Gene length, protein length | 1188 bp, 396 aa |
Immediate neighbours | ywbE, ywbC |
Sequences | Protein DNA DNA_with_flanks |
Genetic context This image was kindly provided by SubtiList
| |
Expression at a glance PubMed |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU38360
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing C(5)-methylcytosine (according to Swiss-Prot)
- Protein family: RlmI family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Modification:
- Effectors of protein activity:
- Localization:
- cytoplasm (according to Swiss-Prot)
Database entries
- Structure:
- UniProt: P39587
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion: GP1614 amyE::p(ywbD-lacZ cat), constructed with pGP2150 based on pAC5, available in Jörg Stülke's lab
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Frances Chu, Daniel B Kearns, Steven S Branda, Roberto Kolter, Richard Losick
Targets of the master regulator of biofilm formation in Bacillus subtilis.
Mol Microbiol: 2006, 59(4);1216-28
[PubMed:16430695]
[WorldCat.org]
[DOI]
(P p)